Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr22g0359871 Lupinus albus HOM05D009313 ORTHO05D011011 1.4e-145 519.6 263 100.0
Glyma.19G101300 Glycine max HOM05D009313 ORTHO05D011011 6.5e-87 324.7 288 63.2
Medtr7g083810 Medicago truncatula HOM05D009313 ORTHO05D011011 7.0e-81 304.7 282 60.6
VMungo1383G2680 Vigna mungo HOM05D009313 ORTHO05D011011 1.7e-79 300.1 283 62.5
TPR.G17461 Trifolium pratense HOM05D009313 ORTHO05D011011 3.6e-77 292.4 288 60.4
Lj1g0004251 Lotus japonicus HOM05D009313 ORTHO05D011011 6.1e-77 291.6 287 58.5
Psat3g094040 Pisum sativum HOM05D009313 ORTHO05D011011 4.0e-76 288.9 283 58.3
Phvul.001G086400 Phaseolus vulgaris HOM05D009313 ORTHO05D011011 1.5e-75 287.0 312 55.4
arahy.Tifrunner.gnm1.ann1.TM67C6 Arachis hypogaea HOM05D009313 ORTHO05D011011 2.7e-64 249.6 272 55.1
Ca_08127_v3 Cicer arietinum L. HOM05D009313 ORTHO05D011011 2.7e-64 249.6 268 56.3
arahy.Tifrunner.gnm1.ann1.GK0RAW Arachis hypogaea HOM05D009313 ORTHO05D011011 3.8e-63 245.7 272 54.8
Glyma.16G049900 Glycine max HOM05D009313 ORTHO05D011011 7.5e-59 231.5 283 50.9
Sabra16G0204400 Salix brachista HOM05D009313 ORTHO05D011011 1.3e-23 114.4 248 35.9
CDE06G0447 Ceratophyllum demersum HOM05D000592 ORTHO05D000900 1.7e-23 114.0 257 35.8
Potri.001G322200 Populus trichocarpa HOM05D009313 ORTHO05D011011 4.3e-22 109.4 248 35.1
Thecc.04G045600 Theobroma cacao HOM05D009313 ORTHO05D011011 2.1e-21 107.1 268 35.8
TWI34G0624 Tripterygium wilfordii HOM05D009313 ORTHO05D011011 1.1e-20 104.8 263 35.0
Duzib187G0327 Durio zibethinus HOM05D009313 ORTHO05D011011 1.4e-20 104.4 256 32.8
Atru.chr6.2639 Acer truncatum HOM05D009313 ORTHO05D011011 2.0e-19 100.5 281 33.8
TAR622G0278 Trochodendron aralioides HOM05D000592 ORTHO05D000900 5.8e-19 99.0 265 33.6
Gohir.D07G237500 Gossypium hirsutum HOM05D009313 ORTHO05D011011 5.4e-17 92.4 246 32.9
Ciclev10016598m.g Citrus clementina HOM05D009313 ORTHO05D011011 1.6e-16 90.9 234 32.1
Nn3g16307 Nelumbo nucifera HOM05D000592 ORTHO05D000900 2.1e-16 90.5 269 32.0
CDE02G0335 Ceratophyllum demersum HOM05D000592 ORTHO05D000900 2.7e-16 90.1 238 30.7
Gorai.001G273400 Gossypium raimondii HOM05D009313 ORTHO05D011011 2.7e-16 90.1 233 32.6
Gohir.A07G230300 Gossypium hirsutum HOM05D009313 ORTHO05D011011 3.5e-16 89.7 232 32.3
AUR62041077 Chenopodium quinoa HOM05D023748 ORTHO05D011011 4.6e-16 89.4 244 32.8
Cfa009434 Carpinus fangiana HOM05D000592 ORTHO05D000900 1.8e-15 87.4 252 31.3
AUR62037838 Chenopodium quinoa HOM05D023748 ORTHO05D011011 1.9e-14 84.0 241 30.3
COL.COLO4_13346 Corchorus olitorius HOM05D009313 ORTHO05D011011 1.9e-14 84.0 261 29.9
PSO063G0046 Papaver somniferum HOM05D000592 ORTHO05D000900 7.4e-14 82.0 244 27.9
CsaV3_3G027710 Cucumis sativus L. HOM05D042272 ORTHO05D011011 9.6e-14 81.6 267 30.0
Actinidia30596 Actinidia chinensis HOM05D000592 ORTHO05D000900 3.7e-13 79.7 261 29.5
Psat4g194360 Pisum sativum HOM05D009313 ORTHO05D011011 3.7e-13 79.7 58 70.7
PSO170G3386 Papaver somniferum HOM05D000592 ORTHO05D000900 4.8e-13 79.3 239 27.6
Psat1g213240 Pisum sativum HOM05D009313 ORTHO05D011011 2.4e-12 77.0 59 66.1
EL10Ac6g13386 Beta vulgaris HOM05D023748 ORTHO05D011011 1.5e-11 74.3 248 29.4
Manes.09G186700 Manihot esculenta HOM05D000592 ORTHO05D000900 1.5e-11 74.3 260 26.9
Manes.04G092100 Manihot esculenta HOM05D009313 ORTHO05D011011 3.4e-11 73.2 312 25.3
RcHm_v2.0_Chr4g0429101 Rosa chinensis HOM05D000592 ORTHO05D000900 3.4e-11 73.2 245 29.8
Thecc.02G194900 Theobroma cacao HOM05D000592 ORTHO05D000900 3.4e-11 73.2 245 28.6
MELO3C014809.2 Cucumis melo HOM05D042272 ORTHO05D011011 3.8e-10 69.7 211 29.4
Cc11_g15160 Coffea canephora HOM05D000592 ORTHO05D000900 8.4e-10 68.6 262 25.2
Gohir.D08G080600 Gossypium hirsutum HOM05D000592 ORTHO05D000900 8.4e-10 68.6 254 28.3
Cfa006032 Carpinus fangiana HOM05D000592 ORTHO05D000900 4.2e-09 66.2 258 28.3
Migut.K01041 Erythranthe guttata HOM05D000592 ORTHO05D000900 5.5e-09 65.9 250 28.4
Gorai.004G085700 Gossypium raimondii HOM05D000592 ORTHO05D000900 5.5e-09 65.9 254 28.0
MD16G1128900 Malus domestica HOM05D000592 ORTHO05D000900 5.5e-09 65.9 243 28.4
Potri.003G164200 Populus trichocarpa HOM05D000592 ORTHO05D000900 5.5e-09 65.9 260 26.2
Aa31LG1G29350 Aethionema arabicum HOM05D000592 ORTHO05D000900 7.1e-09 65.5 238 27.3
MBI19_g04671_MAGBIO Magnolia biondii HOM05D000592 ORTHO05D000900 7.1e-09 65.5 253 25.3
Duzib132G1222 Durio zibethinus HOM05D000592 ORTHO05D000900 9.3e-09 65.1 230 26.1
Gohir.A08G072600 Gossypium hirsutum HOM05D000592 ORTHO05D000900 9.3e-09 65.1 253 26.5
TWI63G0646 Tripterygium wilfordii HOM05D009313 ORTHO05D011011 9.3e-09 65.1 239 31.4
Haze_04818 Corylus avellana HOM05D000592 ORTHO05D000900 1.2e-08 64.7 258 27.9
AT2G47920 Arabidopsis thaliana HOM05D000592 ORTHO05D000900 1.6e-08 64.3 243 24.3
Gohir.D02G174800 Gossypium hirsutum HOM05D000592 ORTHO05D000900 1.6e-08 64.3 222 28.4
ClCG05G012740 Citrullus lanatus HOM05D042272 ORTHO05D011011 2.7e-08 63.5 210 31.0
COL.COLO4_08024 Corchorus olitorius HOM05D000592 ORTHO05D000900 2.7e-08 63.5 252 27.8
FAN12G2177 Fragaria x ananassa HOM05D000592 ORTHO05D000900 2.7e-08 63.5 250 26.4
Gorai.005G196400 Gossypium raimondii HOM05D000592 ORTHO05D000900 2.7e-08 63.5 220 28.6
FvH4_4g22860 Fragaria vesca HOM05D000592 ORTHO05D000900 3.5e-08 63.2 247 28.3
Duzib138G0632 Durio zibethinus HOM05D000592 ORTHO05D000900 4.6e-08 62.8 253 25.3
FAN07G1168 Fragaria x ananassa HOM05D000592 ORTHO05D000900 4.6e-08 62.8 262 26.3
CiPaw.07G100400 Carya illinoinensis HOM05D000592 ORTHO05D000900 6.0e-08 62.4 249 27.3
Lj1C38T5 Lonicera japonica HOM05D000592 ORTHO05D000900 7.9e-08 62.0 237 24.5
TAR374G1193 Trochodendron aralioides HOM05D000592 ORTHO05D000900 7.9e-08 62.0 135 37.8
Manes.05G068000 Manihot esculenta HOM05D000592 ORTHO05D000900 3.0e-07 60.1 234 27.4
Gorai.003G115900 Gossypium raimondii HOM05D009313 ORTHO05D011011 3.9e-07 59.7 63 49.2
Gohir.A03G151700 Gossypium hirsutum HOM05D000592 ORTHO05D000900 5.1e-07 59.3 222 27.0
Sabra03G0119400 Salix brachista HOM05D000592 ORTHO05D000900 5.1e-07 59.3 257 25.7
Eucgr.K03438 Eucalyptus grandis HOM05D000592 ORTHO05D000900 8.7e-07 58.5 252 25.4
MSTRG.18192 Avicennia marina HOM05D000592 ORTHO05D000900 1.1e-06 58.2 241 25.3
Ciclev10021389m.g Citrus clementina HOM05D000592 ORTHO05D000900 1.1e-06 58.2 256 24.6
Cpa.g.sc70.81 Carica papaya HOM05D009313 ORTHO05D011011 1.5e-06 57.8 200 30.0
THA.LOC104817528 Tarenaya hassleriana HOM05D000592 ORTHO05D000900 1.5e-06 57.8 198 24.7
TWI59G0265 Tripterygium wilfordii HOM05D000592 ORTHO05D000900 1.5e-06 57.8 241 25.3
RcHm_v2.0_Chr6g0292611 Rosa chinensis HOM05D000592 ORTHO05D000900 1.9e-06 57.4 245 24.9
DCAR_012427 Daucus carota HOM05D000592 ORTHO05D000900 2.5e-06 57.0 229 26.2
FAN27G1209 Fragaria x ananassa HOM05D000592 ORTHO05D000900 2.5e-06 57.0 245 24.9
Cc01_g20260 Coffea canephora HOM05D000592 ORTHO05D000900 3.3e-06 56.6 241 25.3
Duzib133G0431 Durio zibethinus HOM05D000592 ORTHO05D000900 4.3e-06 56.2 256 25.0
FAN20G2100 Fragaria x ananassa HOM05D000592 ORTHO05D000900 5.6e-06 55.8 256 24.6
FAN24G0200 Fragaria x ananassa HOM05D000592 ORTHO05D000900 5.6e-06 55.8 244 24.6
HanXRQChr10g0283281 Helianthus annuus HOM05D000592 ORTHO05D000900 5.6e-06 55.8 234 23.9
Thecc.01G290800 Theobroma cacao HOM05D000592 ORTHO05D000900 5.6e-06 55.8 253 26.1
CAN.G426.29 Capsicum annuum HOM05D000592 ORTHO05D000900 7.4e-06 55.5 232 26.7
FAN17G2167 Fragaria x ananassa HOM05D000592 ORTHO05D000900 7.4e-06 55.5 242 28.9
Hma1.2p1_0209F.1_g089050 Hydrangea macrophylla HOM05D000592 ORTHO05D000900 7.4e-06 55.5 241 26.6
Lalb_Chr21g0306701 Lupinus albus HOM05D000592 ORTHO05D000900 7.4e-06 55.5 253 24.1
Sopen09g029320 Solanum pennellii HOM05D000592 ORTHO05D000900 9.6e-06 55.1 241 25.3


User provided reference genes

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