Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.7e-134 482.6 245 100.0
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 3.2e-88 328.9 251 68.9
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 7.4e-85 317.8 247 66.0
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 1.7e-84 316.6 247 66.0
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 3.7e-84 315.5 247 64.0
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 2.4e-83 312.8 246 64.6
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 2.4e-83 312.8 246 64.6
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 5.9e-82 308.1 249 67.9
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.0e-81 307.4 249 67.5
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 3.8e-81 305.4 254 63.0
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 8.5e-81 304.3 246 64.6
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 1.9e-80 303.1 243 66.3
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 3.2e-80 302.4 254 62.2
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 5.5e-80 301.6 254 61.8
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 6.1e-79 298.1 247 63.2
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.8e-78 296.6 246 63.4
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 1.5e-77 293.5 248 61.7
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 4.4e-77 292.0 248 62.9
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 4.4e-77 292.0 248 61.7
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.3e-76 290.4 237 62.9
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 1.1e-75 287.3 237 62.4
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 1.4e-75 287.0 237 62.4
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 3.5e-74 282.3 237 60.8
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 4.5e-74 282.0 245 60.4
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 1.7e-73 280.0 239 60.3
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 8.5e-73 277.7 243 59.3
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.5e-72 276.9 236 59.3
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 3.2e-72 275.8 226 61.1
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 5.5e-72 275.0 229 60.3
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 5.5e-72 275.0 237 58.2
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.2e-71 273.9 237 57.8
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 3.6e-71 272.3 224 62.9
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 4.7e-71 271.9 236 59.7
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 6.1e-71 271.6 237 57.8
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 2.3e-70 269.6 238 59.2
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 4.0e-70 268.9 237 59.9
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 4.0e-70 268.9 249 57.0
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 4.0e-70 268.9 237 59.1
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 1.5e-69 266.9 207 65.2
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 4.4e-69 265.4 243 57.6
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.2e-68 263.1 198 65.2
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.8e-68 262.7 238 57.6
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 2.8e-68 262.7 214 60.7
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 6.3e-68 261.5 218 61.5
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.1e-67 260.8 241 56.0
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 2.4e-67 259.6 238 57.1
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 4.1e-67 258.8 238 57.1
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 5.3e-67 258.5 177 70.1
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 5.3e-67 258.5 222 59.5
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 9.1e-67 257.7 222 60.4
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 9.1e-67 257.7 222 60.4
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 9.1e-67 257.7 216 60.6
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 1.2e-66 257.3 247 55.1
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 2.7e-66 256.1 204 62.7
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 4.5e-66 255.4 225 60.0
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 5.9e-66 255.0 225 60.0
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 5.9e-66 255.0 225 60.0
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 5.9e-66 255.0 210 63.8
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 7.7e-66 254.6 195 64.6
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 1.7e-65 253.4 233 58.4
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 2.2e-65 253.1 214 62.1
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 2.9e-65 252.7 180 68.3
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 3.8e-65 252.3 242 53.3
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 6.5e-65 251.5 237 58.2
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 8.5e-65 251.1 234 57.3
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 1.1e-64 250.8 244 56.1
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.9e-64 250.0 180 68.3
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 2.5e-64 249.6 185 69.2
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 3.2e-64 249.2 175 70.9
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 4.2e-64 248.8 205 63.4
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 9.4e-64 247.7 234 56.4
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 1.2e-63 247.3 205 61.0
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.7e-63 246.1 157 75.2
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 3.6e-63 245.7 242 55.4
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 3.6e-63 245.7 241 55.2
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.6e-63 245.7 204 60.8
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 4.7e-63 245.4 268 52.2
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 4.7e-63 245.4 236 56.4
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.4e-62 243.8 234 55.6
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 1.4e-62 243.8 204 60.8
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 1.8e-62 243.4 204 59.3
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.3e-62 243.0 204 60.3
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 4.0e-62 242.3 187 63.6
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.5e-61 240.4 204 61.8
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 2.6e-61 239.6 204 58.8
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 3.4e-61 239.2 203 58.6
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 4.4e-61 238.8 198 62.6
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 5.7e-61 238.4 151 76.2
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 5.7e-61 238.4 201 65.2
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.3e-60 237.3 242 52.9
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.3e-60 237.3 204 60.3
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.3e-60 237.3 186 63.4
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.7e-60 236.9 240 55.0
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 2.2e-60 236.5 204 60.3
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 3.7e-60 235.7 151 74.8
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 1.4e-59 233.8 149 76.5
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 1.4e-59 233.8 243 52.7
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 3.1e-59 232.6 233 55.4
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 3.1e-59 232.6 145 77.2
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 4.1e-59 232.3 218 55.5
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.5e-58 229.2 203 57.6
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 3.8e-57 225.7 226 54.0
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 1.1e-56 224.2 246 50.0
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.9e-56 223.4 203 58.6
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 5.5e-56 221.9 173 63.6
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 7.2e-56 221.5 236 52.1
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.8e-55 219.5 198 56.1
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 1.0e-54 217.6 134 76.1
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.5e-53 213.8 142 71.1
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.5e-53 213.8 188 57.4
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.0e-53 213.4 153 68.6
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.4e-53 212.6 147 69.4
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 4.4e-53 212.2 158 63.3
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 9.8e-53 211.1 143 68.5
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 3.7e-52 209.1 149 73.2
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 3.7e-52 209.1 155 63.2
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 4.9e-52 208.8 188 55.9
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 4.9e-52 208.8 179 57.5
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.8e-51 206.8 206 56.3
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.1e-51 206.1 146 68.5
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 2.0e-50 203.4 172 58.1
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 7.8e-50 201.4 192 58.3
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.8e-49 199.1 200 53.5
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 1.9e-48 196.8 120 77.5
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 3.6e-47 192.6 194 53.6
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 3.6e-47 192.6 143 62.2
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 6.8e-46 188.3 156 59.0
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.2e-45 187.6 162 56.8
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 4.9e-44 182.2 200 52.5
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 8.3e-44 181.4 197 51.8
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 4.1e-43 179.1 140 60.0
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 5.4e-43 178.7 143 58.7
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 9.2e-43 177.9 247 42.9
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 5.9e-42 175.3 142 54.2
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 2.5e-40 169.9 241 41.9
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 7.3e-40 168.3 171 57.3
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 6.2e-39 165.2 169 50.3
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.2e-36 156.8 135 60.7
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.0e-33 147.9 172 48.3
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 5.0e-33 145.6 155 54.2
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.3e-32 141.7 208 39.9
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 8.1e-31 138.3 145 52.4
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 1.6e-26 124.0 129 51.2
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 4.7e-23 112.5 150 46.0
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.5e-21 107.5 79 64.6
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.1e-16 91.3 140 37.1
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 4.7e-15 85.9 131 32.1
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 8.1e-15 85.1 148 33.1
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 4.4e-13 79.3 150 30.0
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.1e-11 74.7 141 32.6
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 1.4e-11 74.3 83 50.6
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.9e-08 63.9 120 28.3
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.3e-08 62.0 80 46.2
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.1e-06 58.2 156 27.6
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 3.1e-06 56.6 83 39.8


User provided reference genes

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