Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 2.6e-101 372.1 195 100.0
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 3.1e-57 225.7 214 64.5
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 4.3e-51 205.3 213 58.2
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 8.1e-50 201.1 193 63.2
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 5.2e-49 198.4 196 61.7
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 5.8e-48 194.9 209 58.9
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 6.2e-42 174.9 183 58.5
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 1.4e-38 163.7 202 54.5
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 1.6e-37 160.2 214 49.1
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 2.1e-37 159.8 216 50.0
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 2.7e-37 159.5 180 54.4
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 3.5e-37 159.1 210 52.4
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 4.6e-37 158.7 186 55.9
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 6.0e-37 158.3 180 54.4
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 2.3e-36 156.4 186 57.0
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 3.3e-35 152.5 180 53.3
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 5.6e-35 151.8 179 50.8
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 1.2e-34 150.6 184 53.3
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 1.6e-34 150.2 213 47.4
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 2.1e-34 149.8 180 52.2
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 2.8e-34 149.4 210 47.1
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 3.6e-34 149.1 182 51.1
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 8.1e-34 147.9 206 50.5
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 8.1e-34 147.9 185 51.4
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.4e-33 146.4 186 47.8
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 2.4e-33 146.4 187 49.2
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 5.2e-33 145.2 199 49.7
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 2.0e-32 143.3 181 49.2
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 2.6e-32 142.9 188 47.9
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 5.8e-32 141.7 193 49.2
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 7.6e-32 141.4 189 48.7
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 7.6e-32 141.4 189 47.6
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.2e-31 139.8 184 50.0
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 3.8e-31 139.0 181 50.8
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 4.9e-31 138.7 182 47.8
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 8.4e-31 137.9 181 47.0
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 1.1e-30 137.5 209 46.4
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.1e-30 137.5 207 47.3
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.4e-30 137.1 209 46.4
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 1.9e-30 136.7 180 50.0
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 7.1e-30 134.8 190 47.9
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 9.3e-30 134.4 194 47.4
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.1e-29 133.3 182 47.3
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.7e-29 132.9 205 46.3
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.5e-29 132.5 194 47.4
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.5e-29 132.5 204 46.1
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 4.6e-29 132.1 176 46.0
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 6.0e-29 131.7 187 48.7
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 6.0e-29 131.7 180 48.9
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 6.0e-29 131.7 205 46.3
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 7.8e-29 131.3 183 49.7
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 1.0e-28 131.0 182 49.5
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 2.3e-28 129.8 202 47.5
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 3.0e-28 129.4 180 47.2
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 3.9e-28 129.0 183 48.1
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 3.3e-27 125.9 184 47.3
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 4.3e-27 125.6 185 46.5
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 4.3e-27 125.6 185 46.5
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.6e-26 123.6 183 49.2
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 2.8e-26 122.9 172 52.9
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.8e-26 122.1 150 48.7
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 4.8e-26 122.1 172 48.8
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 4.8e-26 122.1 188 45.2
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 1.1e-25 120.9 203 42.4
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.1e-25 120.9 183 45.4
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.8e-25 120.2 188 50.5
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 3.1e-25 119.4 182 44.5
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 3.1e-25 119.4 185 46.5
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 4.0e-25 119.0 138 61.6
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 4.0e-25 119.0 181 45.9
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 9.0e-25 117.9 171 48.0
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 9.0e-25 117.9 186 46.8
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 2.0e-24 116.7 182 45.1
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 9.9e-24 114.4 188 43.6
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 1.3e-23 114.0 197 42.1
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 4.9e-23 112.1 191 42.9
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 4.9e-23 112.1 138 50.7
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 8.4e-23 111.3 196 43.4
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 2.4e-22 109.8 187 42.2
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 3.2e-22 109.4 182 44.5
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 4.2e-22 109.0 195 45.1
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.6e-21 107.1 185 44.3
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 2.1e-21 106.7 166 47.0
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 4.6e-21 105.5 180 43.3
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 2.3e-20 103.2 183 40.4
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 5.1e-20 102.1 177 37.3
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.5e-19 100.5 199 43.2
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 1.5e-19 100.5 199 38.7
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.5e-19 100.5 166 44.6
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 1.5e-19 100.5 186 36.6
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 2.5e-19 99.8 182 42.3
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 2.5e-19 99.8 145 47.6
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 5.6e-19 98.6 174 39.7
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 7.4e-19 98.2 199 38.7
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 7.4e-19 98.2 199 38.7
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 9.6e-19 97.8 199 38.7
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 9.6e-19 97.8 176 43.8
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.6e-18 97.1 177 40.7
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 2.1e-18 96.7 186 34.9
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 2.1e-18 96.7 188 39.9
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 1.4e-17 94.0 198 37.9
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.4e-17 94.0 170 44.7
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.8e-17 93.6 197 38.1
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.8e-17 93.6 180 40.0
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.8e-17 93.6 180 40.0
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 3.1e-17 92.8 187 41.2
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 4.0e-17 92.4 171 40.4
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 4.0e-17 92.4 176 42.0
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.0e-17 92.4 179 41.3
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 1.2e-16 90.9 171 40.4
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 1.5e-16 90.5 136 46.3
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 2.6e-16 89.7 199 36.7
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 4.5e-16 89.0 203 36.9
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 4.5e-16 89.0 176 39.8
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 1.7e-15 87.0 92 58.7
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 2.9e-15 86.3 165 41.8
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 4.9e-15 85.5 174 38.5
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 8.4e-15 84.7 172 41.3
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 1.1e-14 84.3 189 38.6
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.4e-14 84.0 181 39.8
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 2.4e-14 83.2 180 37.8
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 5.5e-14 82.0 197 37.1
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 5.5e-14 82.0 166 40.4
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 9.3e-14 81.3 89 53.9
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 1.2e-13 80.9 187 34.8
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 1.2e-13 80.9 198 36.4
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 1.6e-13 80.5 187 34.2
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 2.1e-13 80.1 204 33.8
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 2.1e-13 80.1 187 34.8
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 2.1e-13 80.1 195 35.4
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 2.1e-13 80.1 187 34.8
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 7.9e-13 78.2 192 35.9
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 1.3e-12 77.4 187 33.7
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 2.3e-12 76.6 130 37.7
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 5.1e-12 75.5 202 32.7
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 6.7e-12 75.1 173 38.2
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 6.7e-12 75.1 179 35.8
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 6.7e-12 75.1 192 33.3
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 1.5e-11 73.9 199 32.7
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 2.5e-11 73.2 194 32.5
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 5.6e-11 72.0 171 36.3
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 5.6e-11 72.0 137 40.1
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 1.3e-10 70.9 162 40.1
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 2.8e-10 69.7 176 33.0
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 1.1e-09 67.8 167 36.5
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 1.4e-09 67.4 193 35.2
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 5.8e-08 62.0 68 52.9
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 3.8e-07 59.3 167 31.7
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 4.9e-07 58.9 181 32.0
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 6.5e-07 58.5 176 33.5
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 6.5e-07 58.5 203 31.5
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 3.2e-06 56.2 78 52.6
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 4.2e-06 55.8 102 37.3
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 9.3e-06 54.7 201 31.3
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 9.3e-06 54.7 56 51.8


User provided reference genes

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