Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 1.5e-77 292.7 144 100.0
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 2.0e-74 282.3 144 94.4
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 4.5e-74 281.2 144 93.8
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 5.9e-74 280.8 144 94.4
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 5.9e-74 280.8 144 93.8
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 1.0e-73 280.0 144 93.1
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 94.4
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 1.3e-73 279.6 143 94.4
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 1.7e-73 279.3 144 93.8
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 1.7e-73 279.3 144 93.8
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 2.2e-73 278.9 144 93.1
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 2.2e-73 278.9 144 92.4
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 2.2e-73 278.9 144 92.4
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 93.8
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 93.8
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 92.4
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 93.8
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 5.0e-73 277.7 144 92.4
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 92.4
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 8.5e-73 276.9 144 93.1
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 1.1e-72 276.6 144 93.1
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 1.5e-72 276.2 144 91.7
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 1.9e-72 275.8 144 92.4
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 1.9e-72 275.8 144 91.7
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 1.9e-72 275.8 144 92.4
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 2.5e-72 275.4 144 92.4
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 2.5e-72 275.4 144 93.1
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 2.5e-72 275.4 144 92.4
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 2.5e-72 275.4 144 92.4
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 3.2e-72 275.0 143 91.6
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 4.2e-72 274.6 144 92.4
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 5.5e-72 274.2 144 91.0
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 5.5e-72 274.2 144 91.7
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 7.2e-72 273.9 142 92.3
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 7.2e-72 273.9 142 92.3
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 7.2e-72 273.9 144 91.0
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 9.4e-72 273.5 142 92.3
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 9.4e-72 273.5 141 92.2
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 1.2e-71 273.1 144 91.7
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 1.2e-71 273.1 144 91.0
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 1.6e-71 272.7 142 90.1
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 1.6e-71 272.7 144 90.3
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 1.6e-71 272.7 142 91.5
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 1.6e-71 272.7 144 91.7
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 2.1e-71 272.3 142 92.3
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 2.7e-71 271.9 144 91.7
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.7e-71 271.9 144 89.6
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 2.7e-71 271.9 144 89.6
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 4.7e-71 271.2 144 90.3
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 4.7e-71 271.2 142 91.5
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 4.7e-71 271.2 142 91.5
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 4.7e-71 271.2 142 91.5
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 6.1e-71 270.8 144 91.0
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 6.1e-71 270.8 144 90.3
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 6.1e-71 270.8 144 88.9
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 6.1e-71 270.8 144 89.6
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 6.1e-71 270.8 144 89.6
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 6.1e-71 270.8 144 91.0
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 6.1e-71 270.8 144 91.0
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 1.0e-70 270.0 144 88.9
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.0e-70 270.0 144 88.9
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 1.4e-70 269.6 144 89.6
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 2.3e-70 268.9 144 88.2
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 3.0e-70 268.5 144 88.9
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 4.0e-70 268.1 141 90.1
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 5.2e-70 267.7 144 88.2
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 6.8e-70 267.3 142 89.4
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 6.8e-70 267.3 141 90.1
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 8.8e-70 266.9 144 88.2
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 1.5e-69 266.2 142 88.7
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 3.4e-69 265.0 154 86.4
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 4.4e-69 264.6 144 87.5
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 3.7e-68 261.5 138 88.4
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 2.4e-67 258.8 142 86.6
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 3.1e-67 258.5 167 77.8
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 5.4e-67 257.7 170 75.9
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 7.0e-67 257.3 141 85.8
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.2e-66 256.5 143 86.7
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 1.6e-66 256.1 130 92.3
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 5.9e-66 254.2 142 83.8
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 7.7e-66 253.8 140 85.0
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 7.7e-66 253.8 138 84.8
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 1.0e-65 253.4 140 85.7
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 1.0e-65 253.4 138 85.5
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 1.3e-65 253.1 140 83.6
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 1.7e-65 252.7 140 84.3
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 1.7e-65 252.7 140 83.6
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 1.7e-65 252.7 140 83.6
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 3.8e-65 251.5 140 83.6
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 3.8e-65 251.5 137 85.4
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 8.6e-65 250.4 140 82.9
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 1.1e-64 250.0 140 83.6
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 1.9e-64 249.2 140 82.9
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 1.9e-64 249.2 142 83.1
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 4.2e-64 248.1 203 64.5
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 4.2e-64 248.1 208 64.4
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 1.2e-63 246.5 140 82.1
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 1.2e-63 246.5 140 82.1
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 2.8e-63 245.4 140 82.1
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 3.6e-63 245.0 140 81.4
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 3.6e-63 245.0 140 81.4
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 8.0e-63 243.8 138 81.9
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 5.2e-62 241.1 140 81.4
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 5.2e-62 241.1 140 81.4
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 5.2e-62 241.1 140 81.4
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 5.2e-62 241.1 140 81.4
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 5.2e-62 241.1 137 83.9
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 3.4e-61 238.4 168 70.2
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 3.4e-61 238.4 156 77.6
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 9.8e-61 236.9 138 79.0
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 2.8e-60 235.3 142 81.7
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 1.3e-57 226.5 129 82.2
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 8.6e-57 223.8 144 69.4
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 1.9e-56 222.6 140 75.7
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 6.1e-55 217.6 142 69.7
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 7.0e-51 204.1 122 79.5
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 2.0e-50 202.6 138 63.8
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 6.0e-50 201.1 114 82.5
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 1.7e-49 199.5 136 64.7
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 3.0e-49 198.7 160 65.0
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 2.8e-47 192.2 99 90.9
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 6.2e-47 191.0 120 80.0
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 6.8e-46 187.6 97 88.7
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 8.3e-44 180.6 118 77.1
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 3.3e-32 142.1 74 94.6
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 5.8e-29 131.3 74 86.5
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 9.9e-29 130.6 74 85.1
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 4.9e-28 128.3 74 83.8
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 8.4e-28 127.5 148 46.6
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 6.6e-25 117.9 140 48.6
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 1.5e-16 90.1 43 90.7
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 5.8e-13 78.2 117 40.2
Cfa022471 Carpinus fangiana HOM05D000441 ORTHO05D124224 9.9e-13 77.4 161 32.9
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 8.4e-12 74.3 49 71.4
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 4.2e-11 72.0 55 63.6
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 7.1e-11 71.2 157 29.9
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 2.8e-07 59.3 36 69.4
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 4.8e-07 58.5 133 29.3
C03p66780 Brassica napus HOM05D046457 ORTHO05D032727 9.0e-06 54.3 83 37.3


User provided reference genes

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