Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr21g0306871 Lupinus albus HOM05D006757 ORTHO05D004651 0.0e+00 1345.9 759 100.0
Glyma.10G280500 Glycine max HOM05D006757 ORTHO05D004651 5.0e-265 917.9 777 73.4
Ca_11197_v3 Cicer arietinum L. HOM05D006757 ORTHO05D004651 2.0e-258 896.0 760 72.6
Phvul.007G020500 Phaseolus vulgaris HOM05D006757 ORTHO05D004651 4.3e-256 888.3 775 71.7
VMungo0720G1053 Vigna mungo HOM05D006757 ORTHO05D004651 1.2e-255 886.7 775 71.2
Lj5g0011768 Lotus japonicus HOM05D006757 ORTHO05D004651 8.0e-255 884.0 777 72.7
arahy.Tifrunner.gnm1.ann1.CLVE3A Arachis hypogaea HOM05D006757 ORTHO05D004651 4.6e-250 868.2 772 70.5
arahy.Tifrunner.gnm1.ann1.18R96V Arachis hypogaea HOM05D006757 ORTHO05D004651 6.0e-250 867.8 772 70.3
TPR.G2437 Trifolium pratense HOM05D006757 ORTHO05D004651 8.1e-239 830.9 668 68.3
Psat6g231440 Pisum sativum HOM05D006757 ORTHO05D004651 1.2e-234 817.0 775 68.1
Medtr1g112280 Medicago truncatula HOM05D006757 ORTHO05D004651 6.0e-234 814.7 766 68.3
CiPaw.05G164400 Carya illinoinensis HOM05D006757 ORTHO05D004651 6.7e-169 598.6 716 57.7
Duzib248G0842 Durio zibethinus HOM05D006757 ORTHO05D004651 8.8e-169 598.2 741 55.7
Prupe.1G340900 Prunus persica HOM05D006757 ORTHO05D004651 1.8e-166 590.5 703 56.5
Gohir.A01G144000 Gossypium hirsutum HOM05D006757 ORTHO05D004651 3.5e-165 586.3 737 55.1
QL03p041041 Quercus lobata HOM05D006757 ORTHO05D004651 5.0e-164 582.4 838 50.7
Gohir.D01G136700 Gossypium hirsutum HOM05D006757 ORTHO05D004651 3.6e-162 576.2 737 55.0
Gorai.002G169200 Gossypium raimondii HOM05D006757 ORTHO05D004651 4.7e-162 575.9 737 55.0
Thecc.02G299300 Theobroma cacao HOM05D006757 ORTHO05D004651 4.7e-162 575.9 729 55.1
MD16G1009700 Malus domestica HOM05D006757 ORTHO05D004651 1.4e-161 574.3 706 56.2
RcHm_v2.0_Chr4g0445651 Rosa chinensis HOM05D006757 ORTHO05D004651 6.3e-159 565.5 778 52.6
FAN17G2536 Fragaria x ananassa HOM05D006757 ORTHO05D004651 1.7e-156 557.4 783 52.0
TWI53G1444 Tripterygium wilfordii HOM05D006757 ORTHO05D004651 1.8e-153 547.4 775 51.0
COL.COLO4_27539 Corchorus olitorius HOM05D006757 ORTHO05D004651 4.0e-153 546.2 726 54.3
FAN12G3615 Fragaria x ananassa HOM05D006757 ORTHO05D004651 2.8e-151 540.0 782 51.0
CSS0018736 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 1.5e-147 527.7 734 53.0
Dinv02708 Davidia involucrata HOM05D006757 ORTHO05D004651 9.5e-147 525.0 709 53.7
PGR142G0977 Punica granatum HOM05D006757 ORTHO05D004651 1.2e-146 524.6 707 51.9
CANSAT78G0289 Cannabis sativa HOM05D006757 ORTHO05D004651 1.0e-145 521.5 596 50.3
FAN07G0462 Fragaria x ananassa HOM05D006757 ORTHO05D004651 1.4e-145 521.2 779 48.5
CsaV3_5G017370 Cucumis sativus L. HOM05D006757 ORTHO05D004651 2.0e-144 517.3 634 47.8
GSVIVG01010290001 Vitis vinifera HOM05D006757 ORTHO05D004651 7.5e-144 515.4 680 55.7
MELO3C005216.2 Cucumis melo HOM05D006757 ORTHO05D004651 1.3e-143 514.6 678 45.9
TAR622G0072 Trochodendron aralioides HOM05D006757 ORTHO05D004651 1.4e-142 511.1 722 52.9
FAN22G1875 Fragaria x ananassa HOM05D006757 ORTHO05D004651 4.1e-142 509.6 836 47.8
ClCG01G006950 Citrullus lanatus HOM05D006757 ORTHO05D004651 1.2e-141 508.1 670 45.7
Sabra10G0071900 Salix brachista HOM05D006757 ORTHO05D004651 1.2e-141 508.1 632 48.9
Nn4g24781 Nelumbo nucifera HOM05D006757 ORTHO05D004651 1.0e-140 505.0 733 48.7
Actinidia12418 Actinidia chinensis HOM05D006757 ORTHO05D004651 1.2e-136 491.5 711 51.8
FvH4_4g36030 Fragaria vesca HOM05D006757 ORTHO05D004651 3.2e-134 483.4 630 56.2
Lj6C727G2 Lonicera japonica HOM05D006757 ORTHO05D004651 3.0e-132 476.9 768 46.9
Rhsim09G0078600 Rhododendron simsii HOM05D006757 ORTHO05D004651 4.9e-127 459.5 857 44.5
Solyc01g007880.4 Solanum lycopersicum HOM05D006757 ORTHO05D004651 8.3e-127 458.8 714 49.0
Aqoxy3G04184 Aquilegia oxysepala HOM05D006757 ORTHO05D004651 7.1e-126 455.7 645 41.2
Sopen01g003410 Solanum pennellii HOM05D006757 ORTHO05D004651 3.5e-125 453.4 714 48.7
Manes.17G092000 Manihot esculenta HOM05D006757 ORTHO05D004651 1.1e-123 448.4 655 53.4
Eucgr.G02041 Eucalyptus grandis HOM05D006757 ORTHO05D004651 2.5e-123 447.2 657 52.5
EL10Ac6g15397 Beta vulgaris HOM05D006757 ORTHO05D004651 4.3e-123 446.4 765 45.4
Ciclev10006553m.g Citrus clementina HOM05D006757 ORTHO05D004651 1.1e-121 441.8 631 52.5
PSO063G3495 Papaver somniferum HOM05D006757 ORTHO05D004651 5.4e-118 429.5 648 41.2
Nitab4.5_0004543g0020 Nicotiana tabacum HOM05D006757 ORTHO05D004651 1.9e-115 421.0 771 44.9
MSTRG.2098 Avicennia marina HOM05D006757 ORTHO05D004651 8.1e-114 415.6 705 46.5
BcaC08g46956 Brassica carinata HOM05D006757 ORTHO05D004651 1.4e-113 414.8 773 45.5
Lsat_1_v5_gn_8_33901 Lactuca sativa HOM05D006757 ORTHO05D004651 5.3e-113 412.9 697 46.6
AUR62017786 Chenopodium quinoa HOM05D006757 ORTHO05D004651 2.6e-112 410.6 830 41.7
Migut.E00572 Erythranthe guttata HOM05D006757 ORTHO05D004651 1.3e-111 408.3 610 42.3
ECA233G5323 Erigeron canadensis HOM05D006757 ORTHO05D004651 2.9e-111 407.1 699 46.9
Sp5g30140 Schrenkiella parvula HOM05D006757 ORTHO05D004651 4.9e-111 406.4 699 46.8
AL2G34890 Arabidopsis lyrata HOM05D006757 ORTHO05D004651 6.4e-111 406.0 703 45.7
SGA_v2.0_scaffold470G52072 Striga asiatica HOM05D006757 ORTHO05D004651 8.4e-111 405.6 723 46.7
ATR0807G004 Amborella trichopoda HOM05D006757 ORTHO05D004651 1.2e-109 401.7 626 38.8
HanXRQChr12g0365871 Helianthus annuus HOM05D006757 ORTHO05D004651 1.7e-108 397.9 700 46.6
AT1G75010 Arabidopsis thaliana HOM05D006757 ORTHO05D004651 3.0e-108 397.1 694 46.1
BraA07t31608Z Brassica rapa HOM05D006757 ORTHO05D004651 3.0e-108 397.1 722 46.4
A07p40640 Brassica napus HOM05D006757 ORTHO05D004651 3.9e-108 396.7 718 46.7
vmacro10765 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 1.1e-107 395.2 694 48.6
Carub.0002s2179 Capsella rubella HOM05D006757 ORTHO05D004651 1.5e-107 394.8 696 46.0
Thhalv10018185m.g Eutrema salsugineum HOM05D006757 ORTHO05D004651 2.5e-107 394.0 707 47.0
Aa31LG4G5230 Aethionema arabicum HOM05D006757 ORTHO05D004651 4.3e-107 393.3 709 46.0
Cc11_g03340 Coffea canephora HOM05D006757 ORTHO05D004651 9.6e-107 392.1 660 48.0
BcaC08g46933 Brassica carinata HOM05D006757 ORTHO05D004651 3.6e-106 390.2 718 46.0
BolC6t39938H Brassica oleracea HOM05D006757 ORTHO05D004651 1.5e-104 384.8 719 45.8
Atru.chr11.1028 Acer truncatum HOM05D006757 ORTHO05D004651 2.2e-103 380.9 476 46.8
C06p49010 Brassica napus HOM05D006757 ORTHO05D004651 1.6e-101 374.8 746 44.9
DCAR_030323 Daucus carota HOM05D006757 ORTHO05D004651 7.9e-101 372.5 533 42.0
THA.LOC104809054 Tarenaya hassleriana HOM05D006757 ORTHO05D004651 3.3e-99 367.1 710 45.1
AUR62003477 Chenopodium quinoa HOM05D006757 ORTHO05D004651 7.4e-99 365.9 645 46.4
Sed0027541 Sechium edule HOM05D006757 ORTHO05D004651 5.8e-96 356.3 469 46.7
Potri.010G099300 Populus trichocarpa HOM05D006757 ORTHO05D004651 1.3e-92 345.1 554 52.0
Cpa.g.sc2.85 Carica papaya HOM05D006757 ORTHO05D004651 4.3e-91 340.1 479 44.9
CARHR068320 Cardamine hirsuta HOM05D006757 ORTHO05D004651 1.6e-90 338.2 632 46.4
Peaxi162Scf00097g00232 Petunia axillaris HOM05D006757 ORTHO05D004651 4.9e-87 326.6 633 45.7
SalBow2G2705 Salvia bowleyana HOM05D006757 ORTHO05D004651 6.5e-87 326.2 574 47.4
CAN.G282.84 Capsicum annuum HOM05D006757 ORTHO05D004651 4.1e-81 307.0 534 50.7
Sc17g0005480 Simmondsia chinensis HOM05D006757 ORTHO05D004651 4.1e-81 307.0 588 45.1
Os09g0555600 Oryza sativa ssp. japonica HOM05D006757 ORTHO05D004651 2.9e-79 300.8 593 33.6
HPP92_025367 Vanilla planifolia HOM05D006757 ORTHO05D004651 1.0e-76 292.4 587 33.4
unitig_699.g19471 Utricularia gibba HOM05D006757 ORTHO05D004651 3.4e-72 277.3 706 38.2
BcaNung05827 Brassica carinata HOM05D006757 ORTHO05D004651 1.1e-67 262.3 724 32.3
Haze_10724 Corylus avellana HOM05D006757 ORTHO05D004651 7.4e-67 259.6 436 53.4
Nitab4.5_0000944g0040 Nicotiana tabacum HOM05D006757 ORTHO05D004651 1.9e-62 245.0 235 53.6
Hma1.2p1_0933F.1_g238410 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 5.5e-54 216.9 450 50.0
BolC2t09256H Brassica oleracea HOM05D006757 ORTHO05D004651 1.2e-53 215.7 514 32.7
Hma1.2p1_0933F.1_g238400 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 2.0e-48 198.4 340 40.3
Oeu001141.1 Olea europaea HOM05D006757 ORTHO05D004651 8.5e-47 193.0 212 48.1
BcaC03g15537 Brassica carinata HOM05D006757 ORTHO05D004651 1.8e-44 185.3 471 32.1
CSS0036943 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 1.8e-41 175.3 175 54.9
Mapoly0058s0047 Marchantia polymorpha HOM05D006757 ORTHO05D004651 7.2e-38 163.3 632 27.1
Hund12802 Selenicereus undatus HOM05D006757 ORTHO05D004651 3.6e-37 161.0 414 46.4
SEGI_38740 Sequoiadendron giganteum HOM05D006757 ORTHO05D004651 3.4e-27 127.9 177 40.1
SalBow2G2121 Salvia bowleyana HOM05D006757 ORTHO05D004651 2.4e-25 121.7 163 42.9
Zm00001eb320640 Zea mays HOM05D006757 ORTHO05D004651 7.8e-24 116.7 253 34.8
Glyma.20G109150 Glycine max HOM05D006757 ORTHO05D004651 2.3e-23 115.2 81 71.6
CDE04G1248 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 3.1e-20 104.8 78 66.7
COL.COLO4_13886 Corchorus olitorius HOM05D003428 ORTHO05D004131 6.8e-20 103.6 305 32.1
CSS0016054 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 1.3e-18 99.4 213 39.9
Actinidia37474 Actinidia chinensis HOM05D006757 ORTHO05D004651 4.9e-18 97.4 146 45.9
CDE04G0645 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 6.0e-16 90.5 305 28.9
CSS0046499 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 1.5e-14 85.9 47 83.0
Peaxi162Scf00097g02317 Petunia axillaris HOM05D006757 ORTHO05D004651 4.3e-14 84.3 78 52.6
Cc11_g03350 Coffea canephora HOM05D006757 ORTHO05D004651 2.1e-13 82.0 114 41.2
Ciclev10006110m.g Citrus clementina HOM05D006757 ORTHO05D004651 1.2e-11 76.3 75 52.0
vmacro10766 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 5.1e-07 60.8 203 26.6
Haze_10728 Corylus avellana HOM05D063416 ORTHO05D034208 5.6e-06 57.4 102 39.2


User provided reference genes

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