Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 1.4e-187 659.4 325 100.0
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 3.9e-150 535.0 321 81.6
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 1.1e-149 533.5 321 79.8
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 5.7e-149 531.2 321 79.8
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 5.7e-149 531.2 321 80.7
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 2.8e-148 528.9 321 80.4
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 2.4e-147 525.8 321 79.1
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 4.5e-146 521.5 321 79.1
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 2.9e-145 518.8 321 79.8
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 3.6e-143 511.9 318 78.3
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 6.7e-142 507.7 321 76.3
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 5.7e-141 504.6 306 78.4
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 2.0e-138 496.1 325 76.6
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 2.4e-131 472.6 322 70.2
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 1.6e-130 469.9 322 70.5
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.0e-130 469.5 322 69.9
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 4.5e-130 468.4 322 69.3
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 2.2e-129 466.1 321 69.5
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 1.1e-128 463.8 324 71.9
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 1.9e-128 463.0 321 68.2
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 1.9e-128 463.0 325 69.8
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 7.2e-128 461.1 322 68.9
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 2.7e-127 459.1 322 69.9
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 3.6e-127 458.8 324 68.8
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.7e-127 458.4 321 68.2
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 6.1e-127 458.0 321 68.5
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 6.1e-127 458.0 322 68.6
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 8.0e-127 457.6 324 68.8
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 1.4e-126 456.8 325 66.2
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 1.8e-126 456.4 324 69.4
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 1.8e-126 456.4 324 68.8
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 4.0e-126 455.3 321 67.6
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 8.8e-126 454.1 323 67.8
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 1.1e-125 453.8 333 67.0
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 1.5e-125 453.4 323 68.7
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 1.5e-125 453.4 324 67.6
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.6e-125 452.6 321 67.9
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 2.2e-124 449.5 322 66.5
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.8e-124 449.1 326 67.5
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 4.8e-124 448.4 324 68.8
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 8.2e-124 447.6 318 67.3
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 1.1e-123 447.2 325 67.4
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.1e-123 447.2 325 67.4
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 1.1e-123 447.2 324 67.9
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 1.1e-123 447.2 322 67.7
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.8e-123 446.4 325 67.4
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 5.3e-123 444.9 326 66.9
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 1.2e-122 443.7 324 66.7
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 1.6e-122 443.4 322 65.8
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 1.6e-122 443.4 324 66.4
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 1.6e-122 443.4 322 65.2
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 1.6e-122 443.4 323 66.3
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.6e-122 443.4 326 66.3
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 2.7e-122 442.6 326 66.0
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 4.5e-122 441.8 323 66.3
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 4.5e-122 441.8 322 67.4
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 5.9e-122 441.4 320 66.6
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 1.0e-121 440.7 319 66.5
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.3e-121 440.3 322 67.4
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.7e-121 439.9 321 67.0
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.9e-121 439.1 327 66.1
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.2e-120 435.3 321 64.8
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 7.2e-120 434.5 369 59.9
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 9.4e-120 434.1 326 66.3
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.2e-119 433.7 323 65.3
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.2e-119 433.7 323 64.7
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.7e-119 432.6 321 64.8
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 3.6e-119 432.2 321 64.8
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 6.1e-119 431.4 324 65.4
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 1.0e-118 430.6 324 65.1
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.8e-118 427.9 320 64.7
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 2.6e-117 426.0 318 63.8
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 7.5e-117 424.5 323 65.0
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.8e-116 422.5 326 65.3
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 6.3e-116 421.4 286 72.4
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 6.3e-116 421.4 322 64.0
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 8.3e-116 421.0 325 64.0
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 8.3e-116 421.0 319 63.9
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 8.3e-116 421.0 328 63.4
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 9.1e-115 417.5 325 63.1
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 4.5e-114 415.2 325 63.7
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 7.7e-114 414.5 325 62.8
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 1.7e-113 413.3 325 63.4
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 5.0e-113 411.8 323 62.5
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 6.5e-113 411.4 323 62.5
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 1.9e-112 409.8 325 62.2
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 1.9e-112 409.8 325 61.8
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 2.5e-112 409.5 325 62.2
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 9.4e-112 407.5 325 62.2
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 9.4e-112 407.5 325 62.5
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 2.7e-111 406.0 322 61.8
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 2.3e-110 402.9 325 60.3
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 2.0e-109 399.8 324 61.1
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 2.6e-109 399.4 323 60.1
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 4.4e-109 398.7 324 61.1
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 5.7e-109 398.3 305 62.6
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 5.7e-109 398.3 264 73.1
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.7e-108 396.7 281 68.7
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 3.7e-108 395.6 324 60.8
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 6.3e-108 394.8 329 60.2
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 1.1e-107 394.0 323 60.1
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 1.8e-107 393.3 325 60.6
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 2.4e-107 392.9 320 61.9
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 7.0e-107 391.3 284 67.6
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 3.5e-106 389.0 318 61.3
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 7.7e-106 387.9 303 60.4
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 7.3e-104 381.3 323 58.8
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.5e-101 373.6 372 54.0
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.4e-99 367.1 286 62.6
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 5.4e-99 365.2 294 61.9
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 1.6e-98 363.6 324 57.1
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 5.9e-98 361.7 221 78.7
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 5.9e-98 361.7 418 49.8
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 7.8e-98 361.3 321 57.3
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 1.0e-97 360.9 324 57.1
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.0e-97 360.9 322 58.7
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.5e-96 356.3 322 58.7
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 2.3e-94 349.7 257 67.7
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 3.2e-91 339.3 541 38.6
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.1e-86 324.3 322 53.1
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 9.8e-85 317.8 270 58.5
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 1.1e-83 314.3 683 32.7
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 7.8e-82 308.1 305 50.5
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 3.6e-79 299.3 234 63.7
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 2.4e-75 286.6 256 58.2
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 4.1e-75 285.8 310 46.5
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 3.5e-74 282.7 310 45.8
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 3.4e-69 266.2 202 64.9
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.1e-67 261.2 179 72.1
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 4.2e-67 259.2 305 44.6
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 3.5e-66 256.1 221 58.8
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 2.4e-46 190.3 299 34.8
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 2.1e-39 167.2 187 41.7
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 3.6e-34 149.8 96 77.1
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 1.9e-32 144.1 118 62.7
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 1.0e-28 131.7 118 60.2
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.9e-28 130.2 74 78.4
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.1e-26 124.0 93 61.3
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.7e-26 123.6 93 61.3
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.8e-23 113.6 85 62.4
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 6.3e-23 112.5 119 52.9
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 7.7e-21 105.5 88 61.4
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 5.0e-20 102.8 327 24.8
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 3.0e-17 93.6 81 56.8
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 4.8e-15 86.3 64 62.5
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 1.0e-09 68.6 49 71.4
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 1.0e-09 68.6 49 71.4
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.0e-09 68.6 43 76.7
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 1.4e-09 68.2 48 72.9
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 1.2e-08 65.1 56 57.1
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 6.3e-07 59.3 69 43.5


User provided reference genes

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