Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 1.4e-33 145.6 69 100.0
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 1.6e-21 105.5 67 73.1
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 3.9e-15 84.3 69 62.3
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 6.6e-15 83.6 69 58.0
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 1.1e-14 82.8 67 58.2
TPR.G10141 Trifolium pratense HOM05D004540 ORTHO05D004852 1.5e-14 82.4 68 63.2
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.9e-14 82.0 70 65.7
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 2.5e-14 81.6 68 58.8
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 6.2e-13 77.0 67 56.7
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 1.1e-12 76.3 69 58.0
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.4e-12 75.9 65 55.4
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 1.4e-12 75.9 65 55.4
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.8e-12 75.5 65 55.4
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.8e-12 75.5 70 52.9
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.1e-12 74.7 66 56.1
TPR.G36647 Trifolium pratense HOM05D004540 ORTHO05D004852 3.1e-12 74.7 67 56.7
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 4.0e-12 74.3 64 54.7
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 5.3e-12 73.9 59 57.6
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 6.9e-12 73.6 74 52.7
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 6.9e-12 73.6 65 55.4
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 6.9e-12 73.6 64 54.7
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 9.0e-12 73.2 66 54.5
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 9.0e-12 73.2 66 54.5
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 9.0e-12 73.2 66 54.5
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 9.0e-12 73.2 69 53.6
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.2e-11 72.8 69 50.7
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.2e-11 72.8 64 51.6
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 1.2e-11 72.8 64 53.1
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 1.5e-11 72.4 67 58.2
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 1.5e-11 72.4 67 53.7
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 2.6e-11 71.6 74 58.1
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 7.6e-11 70.1 82 48.8
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 7.6e-11 70.1 70 52.9
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 9.9e-11 69.7 65 53.8
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 9.9e-11 69.7 65 50.8
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 9.9e-11 69.7 71 49.3
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 1.3e-10 69.3 66 54.5
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 1.7e-10 68.9 59 57.6
Lalb_Chr03g0035181 Lupinus albus HOM05D004540 ORTHO05D004852 3.8e-10 67.8 68 55.9
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 3.8e-10 67.8 66 53.0
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 4.9e-10 67.4 64 56.2
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 4.9e-10 67.4 64 53.1
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 4.9e-10 67.4 69 50.7
QL02p024551 Quercus lobata HOM05D004540 ORTHO05D004852 4.9e-10 67.4 68 44.1
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 1.1e-09 66.2 67 49.3
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 1.4e-09 65.9 69 47.8
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.4e-09 65.9 66 51.5
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 2.4e-09 65.1 69 49.3
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.2e-09 64.7 73 50.7
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 3.2e-09 64.7 64 48.4
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.2e-09 64.3 65 46.2
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 4.2e-09 64.3 66 51.5
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 7.1e-09 63.5 73 46.6
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 9.3e-09 63.2 71 52.1
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 9.3e-09 63.2 66 51.5
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 1.6e-08 62.4 63 52.4
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 2.1e-08 62.0 66 53.0
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.1e-08 62.0 64 45.3
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.1e-08 62.0 64 45.3
Glyma.02G084000 Glycine max HOM05D004540 ORTHO05D004852 2.7e-08 61.6 63 49.2
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 2.7e-08 61.6 62 51.6
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 6.0e-08 60.5 66 50.0
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 6.0e-08 60.5 67 46.3
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 7.9e-08 60.1 47 57.4
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 7.9e-08 60.1 66 47.0
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 1.0e-07 59.7 78 41.0
Medtr6g034805 Medicago truncatula HOM05D004540 ORTHO05D004852 1.0e-07 59.7 67 49.3
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 1.3e-07 59.3 47 57.4
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.3e-07 59.3 47 57.4
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.3e-07 59.3 47 57.4
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 1.3e-07 59.3 43 62.8
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 1.8e-07 58.9 71 49.3
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.0e-07 58.2 62 45.2
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.0e-07 58.2 65 50.8
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.0e-07 58.2 65 50.8
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 3.0e-07 58.2 78 44.9
Sabra02G0055000 Salix brachista HOM05D004540 ORTHO05D004852 3.0e-07 58.2 62 48.4
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 5.1e-07 57.4 65 43.1
Lj2g0012443 Lotus japonicus HOM05D004540 ORTHO05D004852 6.7e-07 57.0 53 56.6
Os04g0418100 Oryza sativa ssp. japonica HOM05D047234 ORTHO05D004852 6.7e-07 57.0 43 65.1
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 8.7e-07 56.6 42 61.9
Migut.C00992 Erythranthe guttata HOM05D004540 ORTHO05D004852 2.5e-06 55.1 47 57.4
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.5e-06 55.1 66 45.5
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 4.3e-06 54.3 68 44.1
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 7.4e-06 53.5 64 43.8
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 7.4e-06 53.5 75 45.3
CSS0005521 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 9.6e-06 53.1 68 44.1
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 9.6e-06 53.1 79 39.2


User provided reference genes

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