Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 0.0e+00 1382.1 828 100.0
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 6.0e-272 941.0 828 75.6
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 5.7e-270 934.5 830 75.2
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 2.5e-265 919.1 846 73.9
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 1.9e-262 909.4 825 73.8
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 3.7e-261 905.2 828 72.8
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 4.1e-260 901.7 833 72.3
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 1.4e-255 886.7 886 61.7
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 1.8e-255 886.3 867 63.7
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 2.0e-251 872.8 830 71.7
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 1.3e-242 843.6 828 69.9
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 5.1e-194 682.2 851 59.9
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 8.7e-186 654.8 746 62.3
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 1.6e-184 650.6 751 60.7
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 4.8e-184 649.0 759 60.7
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 4.4e-182 642.5 755 59.6
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 6.4e-181 638.6 861 56.0
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 5.4e-180 635.6 754 59.3
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 6.6e-178 628.6 755 52.8
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 8.7e-178 628.2 861 55.2
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 7.3e-177 625.2 861 55.1
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 9.6e-177 624.8 782 60.0
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 9.6e-177 624.8 859 55.3
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 1.3e-176 624.4 754 59.7
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 1.1e-175 621.3 758 59.4
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 1.4e-175 620.9 864 55.6
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 1.3e-173 614.4 751 59.0
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 2.9e-173 613.2 791 56.1
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 1.9e-172 610.5 761 59.1
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 3.2e-172 609.8 753 58.6
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 9.3e-172 608.2 688 64.0
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 9.3e-172 608.2 522 83.7
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 6.0e-171 605.5 749 58.5
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 6.0e-171 605.5 668 64.5
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 3.9e-170 602.8 758 58.6
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 6.7e-170 602.1 669 64.3
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 8.1e-168 595.1 747 58.0
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 4.0e-167 592.8 846 55.4
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 2.0e-166 590.5 659 63.4
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 8.4e-165 585.1 663 62.9
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 1.6e-163 580.9 766 57.3
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 2.7e-163 580.1 640 63.4
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 4.6e-163 579.3 755 57.0
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 4.6e-163 579.3 755 57.0
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 3.0e-162 576.6 761 57.0
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 3.0e-162 576.6 658 64.3
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 6.7e-162 575.5 757 57.3
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 2.5e-161 573.5 757 57.5
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 2.5e-161 573.5 757 57.5
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 2.5e-161 573.5 751 52.3
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 5.7e-161 572.4 755 56.8
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 9.6e-161 571.6 696 61.1
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 2.1e-160 570.5 757 57.3
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 8.2e-160 568.5 755 57.1
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 1.1e-159 568.2 762 50.7
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 7.1e-156 555.4 754 56.9
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 1.3e-154 551.2 706 59.6
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 3.3e-153 546.6 660 61.8
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 1.3e-152 544.7 790 48.2
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 1.1e-151 541.6 700 58.4
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 5.3e-151 539.3 760 55.4
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 1.0e-149 535.0 754 48.0
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 4.2e-148 529.6 705 58.3
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 1.2e-147 528.1 755 54.3
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 1.2e-147 528.1 758 53.7
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 1.4e-146 524.6 758 54.0
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 2.3e-146 523.9 740 54.2
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 2.3e-146 523.9 755 54.4
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 3.0e-146 523.5 702 57.4
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 9.7e-145 518.5 692 58.7
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 1.3e-144 518.1 755 54.2
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 1.7e-144 517.7 754 53.4
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 2.8e-144 516.9 700 55.6
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 6.3e-144 515.8 757 47.3
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 1.1e-143 515.0 769 45.9
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 1.8e-143 514.2 750 52.7
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 2.6e-142 510.4 756 54.0
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 2.6e-142 510.4 702 50.3
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 7.7e-142 508.8 696 58.2
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 1.3e-141 508.1 783 53.4
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 1.7e-141 507.7 718 53.2
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 3.2e-140 503.4 697 57.0
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 9.4e-140 501.9 760 46.6
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 1.5e-134 484.6 741 44.7
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 2.1e-131 474.2 595 61.8
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 4.2e-124 449.9 743 50.7
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 2.0e-121 441.0 743 44.3
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 8.3e-112 409.1 638 52.0
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 7.0e-103 379.4 716 46.8
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 5.4e-87 326.6 472 50.6
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 1.1e-84 318.9 399 58.9
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 7.3e-84 316.2 538 54.8
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 4.4e-81 307.0 657 33.2
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 7.1e-79 299.7 702 44.9
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 3.1e-74 284.3 408 60.0
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.0e-61 242.7 740 39.2
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 1.7e-61 241.9 610 43.3
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 7.6e-49 199.9 228 51.8
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 1.0e-40 172.9 192 44.8
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 1.0e-40 172.9 228 47.8
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 6.5e-40 170.2 424 35.8
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 1.6e-38 165.6 328 49.4
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 2.6e-20 105.1 159 42.1
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 7.0e-18 97.1 106 44.3
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 4.5e-17 94.4 74 60.8
Medtr7g061155 Medicago truncatula HOM05D000666 ORTHO05D001431 1.2e-14 86.3 195 39.0
AL6G21210 Arabidopsis lyrata HOM05D007251 ORTHO05D009266 7.0e-10 70.5 241 26.1
Nn8g40494 Nelumbo nucifera HOM05D007251 ORTHO05D009266 2.0e-09 68.9 151 32.5
BcaB05g21499 Brassica carinata HOM05D007251 ORTHO05D009266 3.5e-09 68.2 250 25.2
MD08G1128000 Malus domestica HOM05D007251 ORTHO05D009266 7.7e-09 67.0 136 33.1
TAR626G1006 Trochodendron aralioides HOM05D007251 ORTHO05D009266 1.0e-08 66.6 253 24.5
Duzib168G1420 Durio zibethinus HOM05D007251 ORTHO05D009266 1.3e-08 66.2 255 25.9
A02p00600 Brassica napus HOM05D007251 ORTHO05D009266 1.7e-08 65.9 238 25.2
AL5G34050 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 2.9e-08 65.1 165 29.1
BraA02t05043Z Brassica rapa HOM05D007251 ORTHO05D009266 3.8e-08 64.7 238 24.8
BolC2t06419H Brassica oleracea HOM05D007251 ORTHO05D009266 8.5e-08 63.5 238 24.4
FvH4_2g36670 Fragaria vesca HOM05D007251 ORTHO05D009266 8.5e-08 63.5 148 31.8
PRCOL_00006441 Prasinoderma coloniale HOM05D007104 ORTHO05D008851 8.5e-08 63.5 231 23.4
QL12p025168 Quercus lobata HOM05D007251 ORTHO05D009266 8.5e-08 63.5 255 24.3
Ciclev10010499m.g Citrus clementina HOM05D007251 ORTHO05D009266 1.1e-07 63.2 118 33.1
ATR0580G362 Amborella trichopoda HOM05D007251 ORTHO05D009266 1.9e-07 62.4 259 22.8
Gohir.A05G064200 Gossypium hirsutum HOM05D007251 ORTHO05D009266 1.9e-07 62.4 255 23.9
Sp6g32780 Schrenkiella parvula HOM05D007251 ORTHO05D009266 1.9e-07 62.4 238 25.2
PGSC0003DMG400003133 Solanum tuberosum HOM05D001779 ORTHO05D001753 1.9e-07 62.4 158 27.8
BcaC03g13325 Brassica carinata HOM05D007251 ORTHO05D009266 3.2e-07 61.6 238 24.4
Glyma.18G276500 Glycine max HOM05D004127 ORTHO05D005119 3.2e-07 61.6 152 27.6
Glyma.06G227700 Glycine max HOM05D002453 ORTHO05D008746 4.2e-07 61.2 179 22.3
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 4.2e-07 61.2 63 39.7
Nitab4.5_0002023g0010 Nicotiana tabacum HOM05D007251 ORTHO05D009266 5.5e-07 60.8 257 21.8
Prupe.1G459800 Prunus persica HOM05D007251 ORTHO05D009266 5.5e-07 60.8 148 30.4
C02p04590 Brassica napus HOM05D007251 ORTHO05D009266 7.2e-07 60.5 168 28.0
Solyc08g045780.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 9.4e-07 60.1 148 27.7
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 1.2e-06 59.7 175 29.1
PSO063G0176 Papaver somniferum HOM05D007251 ORTHO05D009266 1.2e-06 59.7 108 36.1
PSO782G5553 Papaver somniferum HOM05D007251 ORTHO05D009266 1.2e-06 59.7 108 36.1
Sabra06G0211800 Salix brachista HOM05D007251 ORTHO05D009266 1.2e-06 59.7 160 28.1
CSS0035408 Camellia sinensis var. sinensis HOM05D007251 ORTHO05D009266 2.1e-06 58.9 153 32.0
Sed0001001 Sechium edule HOM05D001779 ORTHO05D001753 2.1e-06 58.9 162 23.5
Haze_07463 Corylus avellana HOM05D000001 ORTHO05D000003 2.7e-06 58.5 176 25.6
MELO3C003624.2 Cucumis melo HOM05D007251 ORTHO05D009266 2.7e-06 58.5 265 24.2
CsaV3_3G047120 Cucumis sativus L. HOM05D007251 ORTHO05D009266 2.7e-06 58.5 265 24.2
Nn1g09634 Nelumbo nucifera HOM05D001779 ORTHO05D001753 2.7e-06 58.5 162 26.5
Nn8g40891 Nelumbo nucifera HOM05D001779 ORTHO05D001753 2.7e-06 58.5 158 27.2
CiPaw.08G020100 Carya illinoinensis HOM05D007251 ORTHO05D009266 3.6e-06 58.2 149 30.2
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 3.6e-06 58.2 168 53.6
TWI34G2010 Tripterygium wilfordii HOM05D007251 ORTHO05D009266 3.6e-06 58.2 136 29.4
GSVIVG01035517001 Vitis vinifera HOM05D007251 ORTHO05D009266 3.6e-06 58.2 254 21.3
Cfa019110 Carpinus fangiana HOM05D000001 ORTHO05D000003 4.7e-06 57.8 176 25.0
QL02p087711 Quercus lobata HOM05D000001 ORTHO05D000003 4.7e-06 57.8 264 22.0
Sabra09G0042900 Salix brachista HOM05D001779 ORTHO05D001753 4.7e-06 57.8 162 24.7
AagrBONN_evm.TU.Sc2ySwM_228.1812 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.1e-06 57.4 235 23.8
ATR0626G121 Amborella trichopoda HOM05D001779 ORTHO05D001753 8.0e-06 57.0 157 24.8


User provided reference genes

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