Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 8.8e-154 547.0 285 100.0
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 2.8e-120 435.6 285 79.6
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 3.0e-106 389.0 285 73.3
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 5.8e-105 384.8 291 72.2
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 7.5e-105 384.4 294 70.4
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 3.9e-101 372.1 286 70.3
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 1.1e-98 364.0 289 69.6
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 9.5e-92 340.9 284 66.2
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.6e-91 340.1 289 68.2
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 2.8e-91 339.3 289 66.4
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 3.6e-91 339.0 289 67.8
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 8.1e-91 337.8 266 69.5
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 2.3e-90 336.3 297 65.0
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 9.9e-89 330.9 283 64.0
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 3.9e-85 318.9 320 57.2
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 7.3e-84 314.7 283 62.2
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 1.1e-82 310.8 282 59.9
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 1.2e-81 307.4 289 59.5
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 4.4e-81 305.4 259 62.9
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 1.7e-80 303.5 289 59.2
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.9e-79 300.1 282 59.6
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 3.2e-79 299.3 289 60.2
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 3.2e-79 299.3 282 60.3
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 7.1e-79 298.1 283 60.4
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.3e-77 293.9 281 58.0
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 3.0e-77 292.7 288 56.6
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.1e-76 290.8 281 58.0
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.9e-76 290.0 288 56.2
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.9e-76 290.0 288 56.2
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 6.2e-75 285.0 288 57.6
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 9.0e-74 281.2 283 55.8
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 9.0e-74 281.2 283 55.8
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 9.9e-73 277.7 289 55.4
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 2.2e-72 276.6 280 57.9
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 6.4e-72 275.0 253 60.9
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 2.7e-70 269.6 284 56.0
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.7e-70 269.6 256 60.2
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 6.0e-70 268.5 280 55.7
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 6.0e-70 268.5 280 55.7
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.8e-70 268.1 256 59.8
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 7.8e-70 268.1 256 60.9
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.0e-69 267.7 287 55.7
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 8.1e-67 258.1 282 53.2
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 2.0e-65 253.4 285 52.6
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 7.6e-65 251.5 334 47.6
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.1e-63 245.0 311 49.2
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.1e-63 245.0 311 49.2
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 1.2e-62 244.2 291 54.3
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.2e-62 244.2 381 43.0
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 3.9e-61 239.2 282 48.9
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 6.7e-61 238.4 202 64.4
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 5.6e-60 235.3 287 49.8
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 3.7e-59 232.6 226 55.3
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.8e-59 232.3 255 54.1
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 4.8e-59 232.3 395 41.0
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.4e-58 230.7 283 46.6
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 1.5e-57 227.3 208 63.5
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 1.7e-56 223.8 228 57.5
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 1.6e-54 217.2 283 47.3
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.1e-54 216.9 239 51.0
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 1.0e-53 214.5 306 45.8
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 1.8e-53 213.8 290 44.5
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 1.5e-52 210.7 281 45.6
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.9e-52 210.3 241 53.1
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 5.6e-52 208.8 284 45.1
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 9.6e-52 208.0 203 58.1
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 2.1e-51 206.8 293 44.4
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 8.2e-51 204.9 197 57.9
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 8.2e-51 204.9 241 52.3
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.4e-50 204.1 236 52.5
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.6e-49 199.9 220 51.8
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 7.6e-49 198.4 287 41.5
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 1.3e-48 197.6 284 45.1
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 1.3e-48 197.6 284 45.1
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.4e-47 194.1 284 44.4
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 3.2e-47 193.0 284 44.4
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 4.2e-47 192.6 285 43.5
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 1.2e-46 191.0 294 42.9
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.6e-46 190.7 284 44.0
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.6e-46 190.7 227 47.6
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 3.5e-46 189.5 274 47.8
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.3e-45 187.6 270 41.1
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.3e-45 186.8 283 44.2
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 6.7e-45 185.3 225 51.1
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 4.3e-44 182.6 298 43.0
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 7.4e-44 181.8 286 41.6
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 1.3e-43 181.0 265 44.2
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.4e-42 177.6 253 44.7
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 4.1e-42 176.0 232 46.6
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 6.9e-42 175.3 320 40.0
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 6.9e-42 175.3 321 40.8
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 9.0e-42 174.9 292 41.8
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 1.2e-41 174.5 282 39.4
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 2.6e-41 173.3 203 49.3
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.0e-40 171.4 301 39.5
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 1.3e-40 171.0 278 41.4
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 3.8e-40 169.5 290 39.3
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 6.5e-40 168.7 297 38.0
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 1.1e-39 167.9 152 59.2
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 9.4e-39 164.9 305 38.4
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 1.2e-38 164.5 293 40.3
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 1.0e-37 161.4 266 42.1
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 3.0e-37 159.8 294 37.4
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 5.1e-37 159.1 294 38.1
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 8.8e-37 158.3 228 44.3
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 2.0e-36 157.1 267 41.6
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 4.3e-36 156.0 282 37.9
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 4.3e-36 156.0 167 52.7
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 9.7e-36 154.8 267 39.7
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 8.2e-35 151.8 278 41.4
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 6.9e-34 148.7 295 37.6
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 6.9e-34 148.7 172 54.7
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 2.6e-33 146.7 263 39.5
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 2.9e-32 143.3 375 31.5
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 1.4e-31 141.0 164 51.2
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 5.5e-31 139.0 284 37.7
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 7.2e-31 138.7 219 42.9
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 8.8e-29 131.7 321 34.6
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 8.8e-29 131.7 324 34.6
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 5.7e-28 129.0 148 50.0
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 5.3e-26 122.5 212 41.0
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 5.3e-26 122.5 279 35.5
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 7.0e-26 122.1 157 47.1
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 2.0e-25 120.6 243 35.4
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.9e-24 116.7 212 39.6
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 5.0e-24 115.9 290 31.4
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.4e-23 114.4 214 37.9
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 4.7e-22 109.4 204 38.7
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 3.0e-21 106.7 305 28.5
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 3.9e-21 106.3 287 30.7
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 8.8e-21 105.1 216 35.6
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 3.3e-20 103.2 212 35.8
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.8e-19 100.1 112 54.5
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.4e-18 97.8 170 38.2
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 2.0e-17 94.0 103 54.4
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 2.2e-16 90.5 224 34.4
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 2.9e-16 90.1 120 46.7
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 8.0e-14 82.0 314 30.3
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 7.5e-12 75.5 83 54.2
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 1.8e-10 70.9 305 26.9
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 5.3e-10 69.3 56 64.3
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 9.1e-10 68.6 83 48.2
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 4.5e-09 66.2 93 40.9
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 5.5e-07 59.3 98 38.8
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 4.7e-06 56.2 70 47.1
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 6.1e-06 55.8 110 38.2


User provided reference genes

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