Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 3.7e-112 408.3 216 100.0
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 4.7e-91 338.2 220 79.1
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 1.0e-90 337.0 220 78.6
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 2.3e-90 335.9 226 77.9
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 8.8e-90 334.0 220 78.6
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 3.7e-88 328.6 224 78.1
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 6.3e-88 327.8 229 75.5
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.1e-87 327.0 227 75.8
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 1.4e-87 326.6 223 77.1
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 5.4e-87 324.7 226 76.5
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 3.5e-86 322.0 227 75.3
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.2e-85 319.3 224 76.3
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 8.5e-85 317.4 225 73.8
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 3.2e-84 315.5 223 75.3
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 1.6e-83 313.2 224 73.7
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 1.4e-82 310.1 226 74.3
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 6.8e-82 307.8 222 73.9
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 3.7e-80 302.0 222 72.1
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.1e-79 300.4 221 71.9
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.2e-78 297.0 223 70.9
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 1.6e-78 296.6 219 71.7
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 3.5e-78 295.4 219 71.2
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 5.9e-78 294.7 221 71.0
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.0e-77 293.9 223 69.5
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 6.6e-77 291.2 222 69.8
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 8.6e-77 290.8 220 69.5
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 8.6e-77 290.8 224 70.5
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 1.5e-76 290.0 223 69.1
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 2.5e-76 289.3 225 68.0
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 9.5e-76 287.3 225 69.8
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.1e-75 286.2 227 69.2
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 3.6e-75 285.4 224 69.6
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.1e-75 284.6 224 69.6
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.1e-75 284.6 224 70.1
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 8.0e-75 284.3 230 67.8
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 8.0e-75 284.3 224 69.6
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 1.4e-74 283.5 226 68.6
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 1.4e-74 283.5 227 68.7
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 2.3e-74 282.7 226 68.1
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.0e-74 282.3 226 67.7
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.2e-74 281.6 230 66.1
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 5.2e-74 281.6 226 67.3
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 8.9e-74 280.8 224 66.1
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 1.5e-73 280.0 225 66.7
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 4.4e-73 278.5 223 68.2
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 5.7e-73 278.1 229 65.5
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 5.7e-73 278.1 226 67.3
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 7.5e-73 277.7 221 69.2
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 9.8e-73 277.3 220 69.1
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 4.9e-72 275.0 221 67.4
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 8.3e-72 274.2 230 64.3
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.4e-71 273.5 226 65.9
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.4e-71 272.7 222 67.1
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.4e-71 272.7 232 63.4
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 5.4e-71 271.6 225 66.7
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 7.0e-71 271.2 224 66.5
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 7.0e-71 271.2 219 67.1
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 9.2e-71 270.8 239 61.5
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.0e-70 269.6 232 63.4
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 2.7e-70 269.2 221 66.5
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 4.6e-70 268.5 221 65.6
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 5.9e-70 268.1 226 64.6
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.7e-69 266.5 222 64.4
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 2.3e-69 266.2 216 67.1
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 3.9e-69 265.4 213 67.1
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 6.6e-69 264.6 236 61.0
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.5e-68 263.5 231 62.3
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 1.5e-68 263.5 222 64.9
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 1.9e-68 263.1 221 62.9
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 1.9e-68 263.1 222 65.3
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 3.3e-68 262.3 218 63.8
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.3e-68 261.9 236 59.7
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 4.3e-68 261.9 220 63.6
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 5.6e-68 261.5 221 62.0
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 5.6e-68 261.5 221 62.0
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 5.6e-68 261.5 233 60.9
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 7.3e-68 261.2 221 62.4
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.6e-67 260.0 220 61.4
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 2.8e-67 259.2 220 61.8
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 4.7e-67 258.5 221 62.4
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 8.0e-67 257.7 222 61.7
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.0e-66 257.3 221 62.0
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 1.0e-66 257.3 216 63.9
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.8e-66 256.5 218 62.4
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 2.3e-66 256.1 221 62.0
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 4.0e-66 255.4 228 61.0
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 5.2e-66 255.0 216 63.4
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 6.8e-66 254.6 212 62.7
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 2.6e-65 252.7 232 58.2
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 3.4e-65 252.3 217 60.8
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 1.7e-64 250.0 217 63.1
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 1.7e-64 250.0 154 84.4
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 4.9e-64 248.4 212 61.3
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 4.9e-64 248.4 212 61.3
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 4.9e-64 248.4 212 60.4
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 1.1e-63 247.3 235 59.1
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.4e-63 246.9 221 62.4
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 4.1e-63 245.4 234 58.5
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 4.1e-63 245.4 229 58.1
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 5.4e-63 245.0 219 62.6
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 9.2e-63 244.2 224 59.8
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 3.9e-61 238.8 218 59.6
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 7.3e-60 234.6 224 58.0
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 1.4e-58 230.3 220 58.6
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 1.4e-58 230.3 225 58.7
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.4e-58 230.3 213 60.1
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 1.8e-58 229.9 223 56.5
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 2.6e-57 226.1 225 55.1
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 2.2e-56 223.0 255 52.2
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 3.7e-56 222.2 230 53.0
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 6.4e-56 221.5 277 48.4
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 8.3e-56 221.1 162 73.5
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.2e-55 219.2 219 57.1
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 3.2e-55 219.2 186 62.4
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 7.1e-55 218.0 163 71.8
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 6.0e-54 214.9 161 70.2
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 6.0e-54 214.9 229 51.5
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.0e-53 214.2 222 54.5
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 1.3e-53 213.8 169 66.3
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 3.3e-52 209.1 116 92.2
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 1.6e-51 206.8 163 65.6
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 4.0e-50 202.2 219 53.0
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.6e-49 199.5 245 44.9
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.4e-47 193.0 170 62.4
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.4e-47 193.0 241 44.0
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 4.1e-47 192.2 175 61.1
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 8.6e-45 184.5 142 70.4
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 4.2e-39 165.6 145 63.4
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.2e-38 164.1 221 46.2
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 6.6e-37 158.3 168 55.4
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 1.1e-34 151.0 221 39.8
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 1.4e-34 150.6 116 70.7
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 6.9e-34 148.3 116 70.7
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 6.9e-34 148.3 145 55.2
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.4e-33 146.0 213 43.2
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 9.9e-33 144.4 218 48.2
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.1e-31 141.0 143 58.0
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 1.4e-31 140.6 221 37.1
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.9e-31 140.2 189 48.1
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.4e-31 139.8 187 43.9
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.4e-31 138.7 145 54.5
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 7.1e-31 138.3 193 42.0
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 2.1e-30 136.7 213 37.6
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 2.3e-29 133.3 126 61.9
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 1.1e-28 131.0 233 38.6
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 7.4e-28 128.3 136 55.1
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 1.6e-27 127.1 188 47.9
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 4.8e-27 125.6 184 44.0
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 4.5e-25 119.0 74 79.7
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 2.2e-24 116.7 142 50.0
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 1.9e-23 113.6 89 62.9
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 2.7e-22 109.8 76 73.7
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 4.6e-22 109.0 90 67.8
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 7.9e-22 108.2 210 38.1
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.5e-20 103.2 171 42.7
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.5e-20 103.2 70 71.4
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 6.2e-19 98.6 89 59.6
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 8.1e-19 98.2 76 67.1
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 3.1e-18 96.3 54 87.0
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.2e-17 94.4 181 35.9
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.0e-17 93.6 79 60.8
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.0e-17 93.6 79 60.8
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 3.8e-16 89.4 112 44.6
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 1.9e-15 87.0 52 78.8
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 7.1e-15 85.1 53 77.4
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.1e-14 83.6 55 74.5
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 6.0e-14 82.0 53 75.5
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 6.0e-14 82.0 53 75.5
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 6.0e-14 82.0 120 43.3
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.9e-13 79.3 83 56.6
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 5.1e-13 79.0 80 46.2
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 3.3e-12 76.3 70 60.0
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 2.0e-09 67.0 55 69.1
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 5.9e-09 65.5 203 31.0
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 5.9e-09 65.5 203 31.0
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 3.8e-08 62.8 43 69.8
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 3.8e-08 62.8 81 43.2
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 1.1e-07 61.2 72 45.8
VMungo1383G0333 Vigna mungo HOM05D003667 ORTHO05D036049 4.6e-06 55.8 44 75.0
FvH4_5g38702 Fragaria vesca HOM05D003667 ORTHO05D004397 6.1e-06 55.5 35 77.1


User provided reference genes

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