Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1998.4 1012 100.0
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1570.8 1012 79.2
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1562.0 1014 79.3
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1551.2 1013 78.3
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1549.6 1013 78.2
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1547.7 1012 78.0
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1539.2 1015 77.4
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1536.5 1015 77.5
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1533.5 1014 78.3
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1530.4 1016 76.8
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1485.7 1012 75.6
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1485.3 1029 75.2
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1482.2 1013 74.6
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1481.1 971 78.3
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1480.3 1013 74.6
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1479.2 1041 74.2
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1469.1 1007 74.1
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1464.1 1002 73.6
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1457.2 1014 73.1
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1454.5 1088 70.5
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1454.1 1008 72.5
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1436.4 1014 72.5
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1434.9 1008 71.9
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1434.1 1016 72.1
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1433.7 1010 72.1
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1430.6 1015 71.8
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1430.2 1019 71.7
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1428.7 1038 72.1
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1428.3 1008 71.4
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1425.2 968 74.9
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1420.2 1014 71.9
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1419.1 1014 73.4
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1418.3 1033 69.8
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1417.1 1004 71.7
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1414.1 1033 69.7
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1407.9 1026 69.9
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1406.0 1013 72.8
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1405.6 1006 71.4
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1404.4 1044 68.8
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1402.1 1014 70.2
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1398.6 1012 71.1
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1397.1 1016 70.6
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1395.9 1014 70.1
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1394.8 1014 70.0
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1392.5 1009 70.6
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1384.8 1022 69.6
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1384.4 1024 70.7
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1381.3 1010 70.7
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1380.5 1019 69.5
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1379.0 1008 71.4
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1375.5 1013 70.1
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1375.1 1008 71.5
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1374.8 1014 70.0
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1371.7 1014 70.1
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1370.9 1014 69.6
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1364.7 1147 63.5
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1364.7 1008 69.0
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1360.5 1010 69.5
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1360.5 1007 70.5
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1360.1 1010 69.5
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1360.1 1010 69.4
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1358.6 1002 69.9
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1357.8 1010 69.4
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1356.3 1011 68.8
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1355.9 1010 69.3
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1354.0 1018 68.9
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1352.4 1011 68.8
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1349.7 1016 67.9
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1347.8 1011 68.6
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1346.3 1018 68.9
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1346.3 1180 61.5
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1343.9 1017 67.6
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1343.6 1053 66.4
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1341.6 1017 69.7
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1338.9 967 71.5
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1338.2 932 73.0
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1336.6 1034 67.6
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1336.2 1027 67.9
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1336.2 1008 68.0
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1332.4 1024 67.3
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1330.9 1014 67.6
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1330.9 1016 67.1
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1330.9 1008 68.1
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1326.6 1016 67.1
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1312.0 1011 66.8
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1309.7 1015 67.2
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1303.5 1046 65.0
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1298.9 987 67.8
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1292.3 1031 67.1
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1280.8 1032 64.3
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1268.4 1108 61.8
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1263.4 1017 64.0
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1255.4 1023 63.8
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1252.7 1008 66.0
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1251.5 1029 63.8
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1243.8 1008 64.4
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1221.8 987 64.7
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1221.5 1015 63.7
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1218.0 975 65.2
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1208.0 1018 63.0
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1205.7 1021 63.0
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1204.5 980 64.2
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1201.4 1016 63.1
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1198.0 1010 62.7
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1190.6 1033 62.0
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1178.3 955 64.2
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1171.0 1015 60.8
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1159.4 865 69.1
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1158.3 921 65.8
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1154.8 1017 60.7
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1144.0 1005 59.0
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1127.9 1016 60.4
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1127.5 1013 58.0
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1121.3 1045 59.0
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1115.5 1012 57.2
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 1.5e-309 1066.2 904 63.5
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 6.4e-308 1060.8 987 59.4
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 1.6e-306 1056.2 942 58.3
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 2.5e-304 1048.9 809 67.4
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 5.6e-304 1047.7 864 64.0
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 3.9e-281 971.8 948 56.4
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 1.9e-259 899.8 876 55.9
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 7.4e-256 887.9 1044 47.8
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 9.7e-256 887.5 642 73.1
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 2.2e-252 876.3 1036 47.8
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 2.0e-248 863.2 781 61.5
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.2e-245 854.0 985 48.4
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 7.7e-245 851.3 631 68.9
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 6.5e-244 848.2 627 70.7
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.6e-229 800.4 1019 44.6
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.5e-224 783.9 1020 44.9
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.2e-208 731.1 627 60.8
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 2.2e-207 726.9 1225 40.1
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 5.4e-206 722.2 888 44.7
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 8.7e-188 661.8 391 82.9
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 1.1e-171 608.2 488 68.4
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 3.7e-170 603.2 492 67.9
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 3.9e-164 583.2 353 80.2
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 2.7e-157 560.5 389 73.3
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.1e-142 511.9 563 51.3
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 3.5e-128 463.8 526 50.0
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 8.9e-108 396.0 256 77.3
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.4e-105 388.7 281 71.2
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 2.0e-104 384.8 237 80.6
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 9.2e-97 359.4 205 81.0
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 6.0e-88 330.1 279 64.9
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 1.5e-83 315.5 239 64.9
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 1.1e-81 309.3 848 28.9
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 4.6e-72 277.3 162 79.6
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 6.0e-72 276.9 309 57.3
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 7.8e-72 276.6 268 61.2
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.1e-68 266.2 150 82.0
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 5.3e-68 263.8 200 65.0
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 7.9e-48 196.8 506 31.2
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 5.7e-46 190.7 147 70.7
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 3.7e-45 188.0 144 66.7
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 3.1e-44 184.9 114 72.8
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 1.2e-40 172.9 203 50.2
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 3.9e-39 167.9 134 67.9
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 4.3e-38 164.5 90 78.9
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 1.2e-35 156.4 129 64.3
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.5e-30 139.4 79 74.7
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 1.7e-29 136.0 102 71.6
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 8.5e-26 123.6 77 72.7
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 1.8e-23 115.9 96 59.4
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 2.9e-18 98.6 79 62.0
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 6.5e-18 97.4 111 47.7
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 7.5e-14 84.0 118 41.5
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 7.5e-14 84.0 118 41.5
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 9.7e-14 83.6 58 74.1
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 1.3e-13 83.2 77 54.5
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.6e-11 76.3 46 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.7e-10 72.8 50 68.0
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 9.4e-09 67.0 65 50.8
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 7.5e-06 57.4 77 45.5
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 9.8e-06 57.0 71 50.7


User provided reference genes

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