Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr17g0347151 Lupinus albus HOM05D000172 ORTHO05D004529 1.0e-31 139.4 70 100.0
Glyma.02G266900 Glycine max HOM05D000172 ORTHO05D004529 2.1e-24 115.2 59 93.2
Glyma.14G050600 Glycine max HOM05D000172 ORTHO05D004529 2.7e-24 114.8 59 93.2
Ca_06051_v3 Cicer arietinum L. HOM05D000172 ORTHO05D004529 4.7e-24 114.0 59 93.2
Psat2g026680 Pisum sativum HOM05D000172 ORTHO05D004529 7.9e-24 113.2 59 93.2
Lalb_Chr04g0250171 Lupinus albus HOM05D000172 ORTHO05D004529 1.0e-23 112.8 59 89.8
COL.COLO4_07252 Corchorus olitorius HOM05D000172 ORTHO05D004529 1.8e-23 112.1 59 91.5
Lalb_Chr10g0105541 Lupinus albus HOM05D000172 ORTHO05D004529 2.3e-23 111.7 54 96.3
TPR.G25669 Trifolium pratense HOM05D000172 ORTHO05D004529 2.3e-23 111.7 59 91.5
Hma1.2p1_0445F.1_g154200 Hydrangea macrophylla HOM05D000172 ORTHO05D004529 3.0e-23 111.3 59 91.5
Atru.chr6.3272 Acer truncatum HOM05D000172 ORTHO05D004529 3.9e-23 110.9 59 86.4
arahy.Tifrunner.gnm1.ann1.0SG038 Arachis hypogaea HOM05D000172 ORTHO05D004529 3.9e-23 110.9 59 88.1
Phvul.008G215100 Phaseolus vulgaris HOM05D000172 ORTHO05D004529 6.7e-23 110.2 59 88.1
VMungo0647G1522 Vigna mungo HOM05D000172 ORTHO05D004529 6.7e-23 110.2 59 88.1
arahy.Tifrunner.gnm1.ann1.0YR97U Arachis hypogaea HOM05D000172 ORTHO05D004529 1.1e-22 109.4 59 86.4
FAN05G4236 Fragaria x ananassa HOM05D000172 ORTHO05D004529 1.1e-22 109.4 58 86.2
PGR142G0986 Punica granatum HOM05D000172 ORTHO05D004529 1.1e-22 109.4 58 87.9
Thecc.01G183900 Theobroma cacao HOM05D000172 ORTHO05D004529 2.0e-22 108.6 59 88.1
CiPaw.04G108900 Carya illinoinensis HOM05D000172 ORTHO05D004529 2.6e-22 108.2 57 87.7
Hma1.2p1_2840F.1_g329340 Hydrangea macrophylla HOM05D000172 ORTHO05D004529 2.6e-22 108.2 59 89.8
CiPaw.03G153600 Carya illinoinensis HOM05D000172 ORTHO05D004529 3.3e-22 107.8 59 84.7
Duzib138G0538 Durio zibethinus HOM05D000172 ORTHO05D004529 3.3e-22 107.8 60 91.7
FvH4_6g41940 Fragaria vesca HOM05D000172 ORTHO05D004529 3.3e-22 107.8 57 86.0
FAN02G0745 Fragaria x ananassa HOM05D000172 ORTHO05D004529 3.3e-22 107.8 57 86.0
FAN09G3260 Fragaria x ananassa HOM05D000172 ORTHO05D004529 3.3e-22 107.8 57 86.0
FAN14G3661 Fragaria x ananassa HOM05D000172 ORTHO05D004529 3.3e-22 107.8 57 86.0
Lj8A130T58 Lonicera japonica HOM05D000172 ORTHO05D004529 3.3e-22 107.8 59 88.1
Potri.014G160000 Populus trichocarpa HOM05D000172 ORTHO05D004529 3.3e-22 107.8 59 86.4
Cfa014306 Carpinus fangiana HOM05D000172 ORTHO05D004529 4.4e-22 107.5 59 86.4
Haze_12753 Corylus avellana HOM05D000172 ORTHO05D004529 4.4e-22 107.5 59 86.4
CANSAT64G0513 Cannabis sativa HOM05D000172 ORTHO05D004529 5.7e-22 107.1 59 84.7
MD17G1107800 Malus domestica HOM05D000172 ORTHO05D004529 5.7e-22 107.1 58 86.2
QL08p030114 Quercus lobata HOM05D000172 ORTHO05D004529 5.7e-22 107.1 58 86.2
RcHm_v2.0_Chr2g0157821 Rosa chinensis HOM05D000172 ORTHO05D004529 5.7e-22 107.1 58 86.2
Sabra14G0121700 Salix brachista HOM05D000172 ORTHO05D004529 5.7e-22 107.1 59 86.4
Cpa.g.sc132.36 Carica papaya HOM05D000172 ORTHO05D004529 7.4e-22 106.7 59 86.4
Actinidia13730 Actinidia chinensis HOM05D000172 ORTHO05D004529 1.3e-21 105.9 59 86.4
MSTRG.14865 Avicennia marina HOM05D000172 ORTHO05D004529 1.3e-21 105.9 59 83.1
SGA_v2.0_scaffold49G18360 Striga asiatica HOM05D000172 ORTHO05D004529 1.3e-21 105.9 59 84.7
Duzib133G0852 Durio zibethinus HOM05D000172 ORTHO05D004529 1.7e-21 105.5 59 84.7
LjContig00029g0026614 Lotus japonicus HOM05D000172 ORTHO05D004529 1.7e-21 105.5 60 88.3
MD09G1116100 Malus domestica HOM05D000172 ORTHO05D004529 1.7e-21 105.5 58 84.5
MBI16_g26178_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D004529 2.2e-21 105.1 59 84.7
Manes.12G068300 Manihot esculenta HOM05D000172 ORTHO05D004529 2.2e-21 105.1 59 86.4
Rhsim06G0169300 Rhododendron simsii HOM05D000172 ORTHO05D004529 2.2e-21 105.1 59 83.1
TAR624G0902 Trochodendron aralioides HOM05D000172 ORTHO05D004529 2.2e-21 105.1 59 84.7
Aqoxy1G02876 Aquilegia oxysepala HOM05D000172 ORTHO05D004529 2.8e-21 104.8 59 84.7
MELO3C019722.2 Cucumis melo HOM05D000172 ORTHO05D004529 3.7e-21 104.4 61 85.2
CsaV3_6G015540 Cucumis sativus L. HOM05D000172 ORTHO05D004529 3.7e-21 104.4 61 85.2
Medtr5g084930 Medicago truncatula HOM05D000172 ORTHO05D004529 3.7e-21 104.4 60 86.7
Gohir.D11G159300 Gossypium hirsutum HOM05D000172 ORTHO05D004529 4.8e-21 104.0 59 86.4
Gorai.007G169700 Gossypium raimondii HOM05D000172 ORTHO05D004529 4.8e-21 104.0 59 86.4
Peaxi162Scf01333g00016 Petunia axillaris HOM05D000172 ORTHO05D004529 4.8e-21 104.0 59 83.1
CSS0045460 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D004529 6.3e-21 103.6 59 84.7
vmacro12149 Vaccinium macrocarpon HOM05D000172 ORTHO05D004529 6.3e-21 103.6 59 83.1
Gohir.A11G152400 Gossypium hirsutum HOM05D000172 ORTHO05D004529 8.2e-21 103.2 59 84.7
Sopen07g024800 Solanum pennellii HOM05D000172 ORTHO05D004529 8.2e-21 103.2 59 83.1
ATR1128G012 Amborella trichopoda HOM05D000172 ORTHO05D004529 1.1e-20 102.8 59 78.0
ClCG02G018150 Citrullus lanatus HOM05D000172 ORTHO05D004529 1.1e-20 102.8 61 83.6
Oeu010999.1 Olea europaea HOM05D000172 ORTHO05D004529 1.1e-20 102.8 59 81.4
Prupe.3G208600 Prunus persica HOM05D000172 ORTHO05D004529 1.1e-20 102.8 61 83.6
Dinv08710 Davidia involucrata HOM05D000172 ORTHO05D004529 1.4e-20 102.4 53 90.6
Solyc07g049450.3 Solanum lycopersicum HOM05D000172 ORTHO05D004529 1.8e-20 102.1 59 81.4
Nn1g07319 Nelumbo nucifera HOM05D000172 ORTHO05D004529 2.4e-20 101.7 58 81.0
PGSC0003DMG400000661 Solanum tuberosum HOM05D000172 ORTHO05D004529 2.4e-20 101.7 59 81.4
Actinidia09754 Actinidia chinensis HOM05D000172 ORTHO05D004529 3.1e-20 101.3 54 88.9
Lsat_1_v5_gn_9_105181 Lactuca sativa HOM05D000172 ORTHO05D004529 3.1e-20 101.3 59 83.1
Oeu054513.2 Olea europaea HOM05D000172 ORTHO05D004529 4.1e-20 100.9 59 79.7
HanXRQChr14g0429281 Helianthus annuus HOM05D000172 ORTHO05D004529 5.3e-20 100.5 60 86.7
Nitab4.5_0000130g0060 Nicotiana tabacum HOM05D000172 ORTHO05D004529 5.3e-20 100.5 59 81.4
PSO210G3915 Papaver somniferum HOM05D000172 ORTHO05D004529 5.3e-20 100.5 60 81.7
Zm00001eb314620 Zea mays HOM05D000172 ORTHO05D004529 6.9e-20 100.1 59 78.0
ECA240G4132 Erigeron canadensis HOM05D002544 ORTHO05D004529 1.2e-19 99.4 59 81.4
Cc05_g02520 Coffea canephora HOM05D000172 ORTHO05D004529 1.5e-19 99.0 59 79.7
THA.LOC104826128 Tarenaya hassleriana HOM05D000172 ORTHO05D004529 1.5e-19 99.0 63 76.2
CDE07G0353 Ceratophyllum demersum HOM05D000172 ORTHO05D004529 2.0e-19 98.6 57 87.7
Eucgr.K00732 Eucalyptus grandis HOM05D000172 ORTHO05D004529 2.6e-19 98.2 59 76.3
Sed0015934 Sechium edule HOM05D000172 ORTHO05D004529 2.6e-19 98.2 62 77.4
Zm00001eb100620 Zea mays HOM05D000172 ORTHO05D004529 2.6e-19 98.2 59 78.0
CDE04G1854 Ceratophyllum demersum HOM05D000172 ORTHO05D004529 3.4e-19 97.8 55 85.5
VMungo0331G0799 Vigna mungo HOM05D000172 ORTHO05D004529 3.4e-19 97.8 53 88.7
PSO832G1111 Papaver somniferum HOM05D000172 ORTHO05D004529 4.5e-19 97.4 60 78.3
THA.LOC104801013 Tarenaya hassleriana HOM05D000172 ORTHO05D004529 4.5e-19 97.4 50 88.0
Ciclev10015327m.g Citrus clementina HOM05D000172 ORTHO05D004529 7.7e-19 96.7 50 86.0
SalBow1G3887 Salvia bowleyana HOM05D000172 ORTHO05D004529 1.7e-18 95.5 60 80.0
SalBow1G7178 Salvia bowleyana HOM05D000172 ORTHO05D004529 1.7e-18 95.5 60 80.0
HPP92_018301 Vanilla planifolia HOM05D000172 ORTHO05D004529 1.7e-18 95.5 63 68.3
HPP92_018317 Vanilla planifolia HOM05D000172 ORTHO05D004529 1.7e-18 95.5 63 68.3
MSTRG.14127 Avicennia marina HOM05D000172 ORTHO05D004529 2.2e-18 95.1 59 78.0
Nn1g03356 Nelumbo nucifera HOM05D000172 ORTHO05D004529 3.8e-18 94.4 59 72.9
TWI36G0304 Tripterygium wilfordii HOM05D000172 ORTHO05D004529 5.0e-18 94.0 58 82.8
CAN.G1254.2 Capsicum annuum HOM05D000172 ORTHO05D004529 6.5e-18 93.6 54 81.5
Sc12g0002030 Simmondsia chinensis HOM05D000172 ORTHO05D004529 6.5e-18 93.6 60 75.0
TWI75G1599 Tripterygium wilfordii HOM05D000172 ORTHO05D004529 1.1e-17 92.8 55 81.8
TWI18G0101 Tripterygium wilfordii HOM05D000172 ORTHO05D004529 1.9e-17 92.0 56 82.1
GSVIVG01030525001 Vitis vinifera HOM05D000172 ORTHO05D004529 1.9e-17 92.0 54 79.6
Carub.0004s1435 Capsella rubella HOM05D000172 ORTHO05D004529 2.5e-17 91.7 61 73.8
Hund24209 Selenicereus undatus HOM05D000172 ORTHO05D004529 2.5e-17 91.7 67 67.2
Gohir.A07G168200 Gossypium hirsutum HOM05D000172 ORTHO05D004529 4.2e-17 90.9 51 86.3
Aa31LG1G19810 Aethionema arabicum HOM05D000172 ORTHO05D004529 5.5e-17 90.5 64 68.8
AT2G32920 Arabidopsis thaliana HOM05D000172 ORTHO05D004529 7.2e-17 90.1 61 70.5
Ah.14g083060 Amaranthus hybridus HOM05D000172 ORTHO05D004529 9.4e-17 89.7 57 70.2
Thhalv10016663m.g Eutrema salsugineum HOM05D000172 ORTHO05D004529 9.4e-17 89.7 63 69.8
Gohir.D07G174500 Gossypium hirsutum HOM05D000172 ORTHO05D004529 9.4e-17 89.7 51 84.3
Gorai.001G195100 Gossypium raimondii HOM05D000172 ORTHO05D004529 9.4e-17 89.7 51 84.3
Lj1A784T46 Lonicera japonica HOM05D000172 ORTHO05D004529 9.4e-17 89.7 52 80.8
AL4G28440 Arabidopsis lyrata HOM05D000172 ORTHO05D004529 1.6e-16 89.0 61 68.9
Hma1.2p1_0405F.1_g145540 Hydrangea macrophylla HOM05D000172 ORTHO05D004529 2.1e-16 88.6 59 74.6
Aa31LG5G4580 Aethionema arabicum HOM05D000172 ORTHO05D004529 2.7e-16 88.2 61 67.2
CARHR126850 Cardamine hirsuta HOM05D000172 ORTHO05D004529 2.7e-16 88.2 64 67.2
Migut.H01249 Erythranthe guttata HOM05D000172 ORTHO05D004529 2.7e-16 88.2 61 72.1
Sp4g15280 Schrenkiella parvula HOM05D000172 ORTHO05D004529 2.7e-16 88.2 63 68.3
DCAR_019739 Daucus carota HOM05D000172 ORTHO05D004529 6.1e-16 87.0 59 72.9
DCAR_021129 Daucus carota HOM05D000172 ORTHO05D004529 6.1e-16 87.0 52 75.0
A05p12720 Brassica napus HOM05D000172 ORTHO05D004529 8.0e-16 86.7 63 65.1
C04p16640 Brassica napus HOM05D000172 ORTHO05D004529 8.0e-16 86.7 63 65.1
BolC4t23214H Brassica oleracea HOM05D000172 ORTHO05D004529 8.0e-16 86.7 63 65.1
BraA05t20211Z Brassica rapa HOM05D000172 ORTHO05D004529 8.0e-16 86.7 63 65.1
AUR62015115 Chenopodium quinoa HOM05D000172 ORTHO05D004529 1.0e-15 86.3 51 74.5
AUR62017578 Chenopodium quinoa HOM05D000172 ORTHO05D004529 1.0e-15 86.3 51 74.5
BcaB01g03946 Brassica carinata HOM05D000172 ORTHO05D004529 1.4e-15 85.9 49 75.5
BcaB02g10505 Brassica carinata HOM05D000172 ORTHO05D004529 1.4e-15 85.9 62 66.1
BcaC01g05872 Brassica carinata HOM05D000172 ORTHO05D004529 1.4e-15 85.9 49 75.5
HPP92_018319 Vanilla planifolia HOM05D000172 ORTHO05D004529 1.4e-15 85.9 63 63.5
AT1G04980 Arabidopsis thaliana HOM05D000172 ORTHO05D004529 2.3e-15 85.1 62 64.5
Carub.0001s0422 Capsella rubella HOM05D000172 ORTHO05D004529 2.3e-15 85.1 62 66.1
SHI10092 Sapria himalayana HOM05D000172 ORTHO05D004529 2.3e-15 85.1 48 75.0
C03p21560 Brassica napus HOM05D000172 ORTHO05D004529 3.0e-15 84.7 63 66.7
Sp1g03850 Schrenkiella parvula HOM05D000172 ORTHO05D004529 3.0e-15 84.7 51 74.5
EL10Ac9g22817 Beta vulgaris HOM05D000172 ORTHO05D004529 3.9e-15 84.3 62 67.7
Pp3c4_12030 Physcomitrium patens HOM05D000172 ORTHO05D004529 6.7e-15 83.6 59 61.0
AL1G14710 Arabidopsis lyrata HOM05D000172 ORTHO05D004529 8.8e-15 83.2 62 61.3
BolC5t29097H Brassica oleracea HOM05D000172 ORTHO05D004529 1.1e-14 82.8 51 72.5
BraA10t42622Z Brassica rapa HOM05D000172 ORTHO05D004529 1.1e-14 82.8 51 72.5
A10p03460 Brassica napus HOM05D000172 ORTHO05D004529 3.3e-14 81.3 51 70.6
Thhalv10007682m.g Eutrema salsugineum HOM05D000172 ORTHO05D004529 3.3e-14 81.3 50 72.0
C05p03170 Brassica napus HOM05D000172 ORTHO05D004529 5.7e-14 80.5 51 70.6
CARHR004390 Cardamine hirsuta HOM05D000172 ORTHO05D004529 2.8e-13 78.2 50 70.0
AagrBONN_evm.TU.Sc2ySwM_117.284 Anthoceros agrestis HOM05D000172 ORTHO05D004529 8.2e-13 76.6 65 58.5
SMO146G0260 Selaginella moellendorffii HOM05D000172 ORTHO05D004529 1.1e-12 76.3 61 63.9
Mapoly0041s0078 Marchantia polymorpha HOM05D000172 ORTHO05D004529 5.3e-12 73.9 56 58.9
BolC4t27717H Brassica oleracea HOM05D000568 ORTHO05D000628 2.2e-10 68.6 44 65.9
BcaC02g07878 Brassica carinata HOM05D000172 ORTHO05D004529 3.8e-10 67.8 43 67.4
Oeu025371.1 Olea europaea HOM05D000172 ORTHO05D004529 1.1e-09 66.2 59 59.3
BcaB06g28641 Brassica carinata HOM05D000172 ORTHO05D004529 4.7e-08 60.8 36 69.4
CBR_g42178 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-07 58.9 47 53.2


User provided reference genes

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