Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 4.0e-72 274.6 136 100.0
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 8.4e-54 213.8 124 83.1
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 1.3e-51 206.5 117 83.8
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.5e-50 203.0 121 81.0
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.5e-50 203.0 121 81.0
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 5.6e-50 201.1 122 79.5
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 2.8e-49 198.7 121 78.5
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 5.3e-48 194.5 121 77.7
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 1.2e-47 193.4 119 77.3
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 1.5e-47 193.0 121 78.5
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 2.0e-47 192.6 121 76.9
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 6.4e-46 187.6 117 76.9
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 1.2e-44 183.3 116 75.0
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 4.6e-44 181.4 117 71.8
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 7.9e-44 180.6 115 75.7
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 1.3e-43 179.9 126 72.2
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.8e-43 179.5 121 69.4
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 1.8e-43 179.5 121 70.2
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 1.8e-43 179.5 121 70.2
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 1.8e-43 179.5 118 75.4
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 2.3e-43 179.1 132 63.6
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 5.1e-43 177.9 121 70.2
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 6.7e-43 177.6 119 70.6
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 1.9e-42 176.0 115 73.9
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 1.9e-42 176.0 121 70.2
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 4.3e-42 174.9 115 72.2
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 4.3e-42 174.9 115 72.2
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 7.4e-42 174.1 117 71.8
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 2.8e-41 172.2 117 70.9
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 3.7e-41 171.8 122 66.4
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 4.8e-41 171.4 114 72.8
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 6.2e-41 171.0 117 68.4
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 8.1e-41 170.6 111 73.0
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 1.1e-40 170.2 119 68.1
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.4e-40 169.9 121 67.8
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 1.8e-40 169.5 117 70.1
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.8e-40 169.5 117 70.1
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 1.8e-40 169.5 111 75.7
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 2.4e-40 169.1 125 67.2
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 4.0e-40 168.3 121 66.1
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.0e-40 168.3 121 66.1
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 4.0e-40 168.3 121 66.1
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 5.3e-40 167.9 121 66.9
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 5.3e-40 167.9 121 66.9
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 6.9e-40 167.5 121 65.3
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 1.5e-39 166.4 114 70.2
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 2.0e-39 166.0 121 66.1
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 2.0e-39 166.0 123 65.9
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.0e-39 166.0 117 68.4
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 5.8e-39 164.5 120 66.7
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 5.8e-39 164.5 114 69.3
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 5.8e-39 164.5 117 67.5
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 7.6e-39 164.1 119 66.4
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 9.9e-39 163.7 114 68.4
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 1.7e-38 162.9 113 69.9
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 2.2e-38 162.5 121 64.5
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 6.4e-38 161.0 121 64.5
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 6.4e-38 161.0 122 62.3
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 1.4e-37 159.8 129 64.3
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 9.3e-37 157.1 125 61.6
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 9.3e-37 157.1 123 65.9
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.2e-36 156.8 118 65.3
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.6e-36 156.4 128 60.2
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.6e-36 156.4 128 60.2
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 2.1e-36 156.0 118 64.4
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 3.5e-36 155.2 112 66.1
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 6.0e-36 154.5 111 67.6
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 6.0e-36 154.5 111 67.6
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 3.9e-35 151.8 110 67.3
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 8.7e-35 150.6 117 61.5
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 1.1e-34 150.2 112 66.1
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 1.5e-34 149.8 117 61.5
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 2.5e-34 149.1 121 59.5
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 3.3e-34 148.7 117 62.4
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 4.3e-34 148.3 123 59.3
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 5.6e-34 147.9 121 61.2
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 1.3e-33 146.7 118 61.9
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 2.8e-33 145.6 117 62.4
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 1.4e-32 143.3 113 64.6
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 2.4e-32 142.5 127 55.9
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 3.1e-32 142.1 100 70.0
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 6.9e-32 141.0 110 62.7
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 9.0e-32 140.6 121 57.9
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 9.0e-32 140.6 100 66.0
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 9.0e-32 140.6 118 55.9
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 1.2e-31 140.2 115 62.6
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 2.0e-31 139.4 119 59.7
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 5.8e-31 137.9 117 59.0
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 5.8e-31 137.9 117 59.8
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 1.0e-30 137.1 118 57.6
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.3e-30 136.7 121 57.0
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 3.8e-30 135.2 121 57.0
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 1.1e-29 133.7 101 65.3
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 1.4e-29 133.3 104 62.5
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 2.5e-29 132.5 118 56.8
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 5.5e-29 131.3 117 58.1
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 1.6e-28 129.8 87 70.1
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 2.7e-28 129.0 87 69.0
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 3.5e-28 128.6 127 55.1
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 3.5e-28 128.6 117 57.3
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 4.6e-28 128.3 87 69.0
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 4.6e-28 128.3 87 69.0
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 6.0e-28 127.9 106 59.4
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 7.9e-28 127.5 87 67.8
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 7.9e-28 127.5 87 67.8
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 5.1e-27 124.8 117 56.4
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 5.7e-26 121.3 106 54.7
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.6e-25 119.8 90 64.4
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 1.8e-24 116.3 101 56.4
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 2.2e-22 109.4 75 68.0
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 2.2e-22 109.4 87 64.4
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 6.5e-22 107.8 74 64.9
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 3.2e-21 105.5 118 48.3
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 5.5e-21 104.8 72 69.4
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 7.2e-21 104.4 108 49.1
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.6e-20 103.2 90 56.7
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 3.6e-20 102.1 75 61.3
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 1.1e-18 97.1 87 51.7
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 6.9e-16 87.8 78 57.7
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 1.2e-15 87.0 81 45.7
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 9.4e-13 77.4 62 61.3
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 5.1e-11 71.6 39 76.9
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 5.1e-11 71.6 57 63.2
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 8.8e-11 70.9 39 74.4
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 1.8e-08 63.2 50 64.0
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 3.1e-08 62.4 65 52.3
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 4.1e-08 62.0 42 64.3
MD12G1168400 Malus domestica HOM05D004806 ORTHO05D005397 3.4e-07 58.9 29 86.2
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 4.5e-07 58.5 38 73.7
Oeu061605.1 Olea europaea HOM05D004806 ORTHO05D005397 7.7e-07 57.8 42 57.1


User provided reference genes

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