Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr17g0346181 Lupinus albus HOM05D008294 ORTHO05D010468 5.1e-76 287.7 152 100.0
Lalb_Chr04g0251301 Lupinus albus HOM05D008294 ORTHO05D010468 6.3e-42 174.5 156 62.2
Lj1g0007014 Lotus japonicus HOM05D008294 ORTHO05D010468 7.2e-30 134.4 128 57.0
Glyma.02G246900 Glycine max HOM05D008294 ORTHO05D010468 7.5e-27 124.4 139 54.0
Phvul.008G234000 Phaseolus vulgaris HOM05D008294 ORTHO05D010468 5.4e-25 118.2 134 47.0
Thecc.04G121200 Theobroma cacao HOM05D008294 ORTHO05D010468 2.0e-24 116.3 143 49.0
arahy.Tifrunner.gnm1.ann1.HG0CBG Arachis hypogaea HOM05D008294 ORTHO05D010468 7.7e-24 114.4 155 43.2
Glyma.14G069300 Glycine max HOM05D008294 ORTHO05D010468 2.2e-23 112.8 139 48.9
arahy.Tifrunner.gnm1.ann1.RHD4AQ Arachis hypogaea HOM05D008294 ORTHO05D010468 3.8e-23 112.1 154 42.9
Ciclev10013091m.g Citrus clementina HOM05D008294 ORTHO05D010468 3.8e-23 112.1 144 43.1
Manes.01G115600 Manihot esculenta HOM05D008294 ORTHO05D010468 8.5e-23 110.9 125 47.2
Gorai.008G058300 Gossypium raimondii HOM05D008294 ORTHO05D010468 1.5e-22 110.2 112 53.6
GSVIVG01030864001 Vitis vinifera HOM05D008294 ORTHO05D010468 3.2e-22 109.0 140 40.7
Medtr5g079600 Medicago truncatula HOM05D008294 ORTHO05D010468 4.2e-22 108.6 127 49.6
Sabra17G0107200 Salix brachista HOM05D008294 ORTHO05D010468 7.2e-22 107.8 146 41.1
Cc07_g08180 Coffea canephora HOM05D008294 ORTHO05D010468 2.8e-21 105.9 123 43.1
VMungo0647G1342 Vigna mungo HOM05D008294 ORTHO05D010468 8.0e-21 104.4 127 44.9
Potri.004G088300 Populus trichocarpa HOM05D008294 ORTHO05D010468 1.0e-20 104.0 145 40.7
QL11p004113 Quercus lobata HOM05D008294 ORTHO05D010468 4.0e-20 102.1 105 56.2
Potri.017G128700 Populus trichocarpa HOM05D008294 ORTHO05D010468 5.2e-20 101.7 146 40.4
MSTRG.3520 Avicennia marina HOM05D008294 ORTHO05D010468 6.8e-20 101.3 151 40.4
Cpa.g.sc604.2 Carica papaya HOM05D008294 ORTHO05D010468 3.4e-19 99.0 102 46.1
Atru.chr13.2285 Acer truncatum HOM05D008294 ORTHO05D010468 5.7e-19 98.2 146 40.4
Oeu054753.1 Olea europaea HOM05D008294 ORTHO05D010468 5.7e-19 98.2 116 44.0
ClCG05G010930 Citrullus lanatus HOM05D008294 ORTHO05D010468 2.8e-18 95.9 139 41.0
MELO3C020292.2 Cucumis melo HOM05D008294 ORTHO05D010468 1.4e-17 93.6 150 40.0
Nn3g18213 Nelumbo nucifera HOM05D008294 ORTHO05D010468 2.4e-17 92.8 149 41.6
TPR.G3487 Trifolium pratense HOM05D008294 ORTHO05D010468 3.1e-17 92.4 126 46.0
MBI10_g08546_MAGBIO Magnolia biondii HOM05D008294 ORTHO05D010468 4.1e-17 92.0 118 43.2
TAR017G0001 Trochodendron aralioides HOM05D008294 ORTHO05D010468 5.4e-17 91.7 139 40.3
HanXRQChr14g0439951 Helianthus annuus HOM05D008294 ORTHO05D010468 7.0e-17 91.3 122 41.8
Peaxi162Scf00118g00016 Petunia axillaris HOM05D008294 ORTHO05D010468 9.2e-17 90.9 125 36.8
SGA_v2.0_scaffold329G48860 Striga asiatica HOM05D008294 ORTHO05D010468 1.2e-16 90.5 143 38.5
Lsat_1_v5_gn_2_81341 Lactuca sativa HOM05D008294 ORTHO05D010468 4.5e-16 88.6 133 39.8
AUR62023240 Chenopodium quinoa HOM05D008294 ORTHO05D010468 1.0e-15 87.4 180 36.1
Sed0009315 Sechium edule HOM05D008294 ORTHO05D010468 1.0e-15 87.4 138 41.3
CsaV3_3G021650 Cucumis sativus L. HOM05D008294 ORTHO05D010468 1.7e-15 86.7 142 39.4
SalBow7G4521 Salvia bowleyana HOM05D008294 ORTHO05D010468 2.9e-15 85.9 121 42.1
Gohir.D12G055400 Gossypium hirsutum HOM05D008294 ORTHO05D010468 5.0e-15 85.1 108 45.4
Eucgr.F02821 Eucalyptus grandis HOM05D008294 ORTHO05D010468 6.6e-15 84.7 78 48.7
EL10Ac2g04485 Beta vulgaris HOM05D008294 ORTHO05D010468 1.9e-14 83.2 162 35.2
DCAR_025875 Daucus carota HOM05D008294 ORTHO05D010468 2.8e-13 79.3 158 32.9
ECA238G3741 Erigeron canadensis HOM05D008294 ORTHO05D010468 2.8e-13 79.3 123 37.4
Prupe.3G159000 Prunus persica HOM05D008294 ORTHO05D010468 3.6e-13 79.0 88 43.2
Migut.L00469 Erythranthe guttata HOM05D008294 ORTHO05D010468 4.7e-13 78.6 151 33.8
Nitab4.5_0004399g0030 Nicotiana tabacum HOM05D008294 ORTHO05D010468 8.0e-13 77.8 72 44.4
Nitab4.5_0002366g0040 Nicotiana tabacum HOM05D008294 ORTHO05D010468 1.4e-12 77.0 100 38.0
Psat2g041240 Pisum sativum HOM05D008294 ORTHO05D010468 2.3e-12 76.3 123 35.8
Migut.H00270 Erythranthe guttata HOM05D008294 ORTHO05D010468 1.5e-11 73.6 72 45.8
Solyc02g091380.1 Solanum lycopersicum HOM05D008294 ORTHO05D010468 1.5e-11 73.6 106 38.7
Sopen02g036000 Solanum pennellii HOM05D008294 ORTHO05D010468 3.4e-11 72.4 105 39.0
PGSC0003DMG400030645 Solanum tuberosum HOM05D008294 ORTHO05D010468 9.8e-11 70.9 74 43.2
Sopen03g007510 Solanum pennellii HOM05D008294 ORTHO05D010468 2.2e-10 69.7 102 38.2
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 2.9e-10 69.3 69 44.9
Nitab4.5_0002248g0070 Nicotiana tabacum HOM05D008294 ORTHO05D010468 4.9e-10 68.6 106 35.8
PGSC0003DMG400016702 Solanum tuberosum HOM05D008294 ORTHO05D010468 8.3e-10 67.8 102 35.3
SEGI_13625 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 1.8e-09 66.6 75 45.3
SEGI_32988 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 1.8e-09 66.6 75 45.3
SEGI_10730 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 4.1e-09 65.5 124 33.1
Rhsim08G0138100 Rhododendron simsii HOM05D002803 ORTHO05D003089 7.0e-09 64.7 60 50.0
SEGI_15898 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 1.6e-08 63.5 75 44.0
Nitab4.5_0000410g0140 Nicotiana tabacum HOM05D002803 ORTHO05D003089 2.7e-08 62.8 53 50.9
Nitab4.5_0003716g0110 Nicotiana tabacum HOM05D002803 ORTHO05D003089 2.7e-08 62.8 53 50.9
Prupe.1G304400 Prunus persica HOM05D002803 ORTHO05D003089 3.5e-08 62.4 131 35.9
Sc10g0000850 Simmondsia chinensis HOM05D008294 ORTHO05D010468 5.9e-08 61.6 110 31.8
Ah.16g101330 Amaranthus hybridus HOM05D008294 ORTHO05D010468 1.0e-07 60.8 77 35.1
Peaxi162Scf00013g00098 Petunia axillaris HOM05D002803 ORTHO05D003089 1.0e-07 60.8 83 38.6
Gohir.A11G007400 Gossypium hirsutum HOM05D002803 ORTHO05D003089 1.3e-07 60.5 73 42.5
Gohir.D11G006500 Gossypium hirsutum HOM05D002803 ORTHO05D003089 1.3e-07 60.5 73 42.5
AUR62036944 Chenopodium quinoa HOM05D002803 ORTHO05D003089 1.7e-07 60.1 49 53.1
Gohir.A12G265300 Gossypium hirsutum HOM05D002803 ORTHO05D003089 1.7e-07 60.1 45 55.6
Gohir.D12G265500 Gossypium hirsutum HOM05D002803 ORTHO05D003089 1.7e-07 60.1 45 55.6
Gorai.008G285200 Gossypium raimondii HOM05D002803 ORTHO05D003089 1.7e-07 60.1 45 55.6
PGSC0003DMG400005702 Solanum tuberosum HOM05D002803 ORTHO05D003089 1.7e-07 60.1 53 49.1
AUR62032184 Chenopodium quinoa HOM05D002803 ORTHO05D003089 2.3e-07 59.7 45 53.3
Sopen03g038670 Solanum pennellii HOM05D002803 ORTHO05D003089 2.3e-07 59.7 53 49.1
Actinidia39806 Actinidia chinensis HOM05D002803 ORTHO05D003089 3.0e-07 59.3 51 47.1
Cpa.g.sc13.62 Carica papaya HOM05D002803 ORTHO05D003089 3.0e-07 59.3 73 42.5
Gorai.007G007800 Gossypium raimondii HOM05D002803 ORTHO05D003089 3.0e-07 59.3 73 41.1
Peaxi162Scf00015g00069 Petunia axillaris HOM05D002803 ORTHO05D003089 3.0e-07 59.3 69 43.5
Potri.010G130600 Populus trichocarpa HOM05D002803 ORTHO05D003089 3.0e-07 59.3 44 52.3
Thecc.03G027600 Theobroma cacao HOM05D002803 ORTHO05D003089 3.0e-07 59.3 45 55.6
SEGI_25700 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 6.6e-07 58.2 75 48.0
Cpa.g.sc48.126 Carica papaya HOM05D010455 ORTHO05D010927 8.6e-07 57.8 74 40.5
Duzib084G1194 Durio zibethinus HOM05D002803 ORTHO05D003089 8.6e-07 57.8 76 40.8
Sed0002511 Sechium edule HOM05D002803 ORTHO05D003089 8.6e-07 57.8 67 40.3
EL10Ac5g11244 Beta vulgaris HOM05D002803 ORTHO05D003089 1.1e-06 57.4 64 43.8
Solyc03g119810.1 Solanum lycopersicum HOM05D002803 ORTHO05D003089 1.1e-06 57.4 53 47.2
Lsat_1_v5_gn_1_15881 Lactuca sativa HOM05D002803 ORTHO05D003089 1.5e-06 57.0 112 31.2
PGR102G2995 Punica granatum HOM05D002803 ORTHO05D003089 1.5e-06 57.0 70 40.0
unitig_699.g19513 Utricularia gibba HOM05D002803 ORTHO05D003089 1.5e-06 57.0 45 46.7
Aqoxy3G03897 Aquilegia oxysepala HOM05D002803 ORTHO05D003089 1.9e-06 56.6 45 53.3
Lalb_Chr02g0151801 Lupinus albus HOM05D002803 ORTHO05D003089 1.9e-06 56.6 38 50.0
Medtr1g067620 Medicago truncatula HOM05D002803 ORTHO05D003089 1.9e-06 56.6 37 56.8
SEGI_33176 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 1.9e-06 56.6 125 31.2
COL.COLO4_22704 Corchorus olitorius HOM05D002803 ORTHO05D003089 2.5e-06 56.2 43 53.5
Glyma.17G018400 Glycine max HOM05D002803 ORTHO05D003089 2.5e-06 56.2 71 35.2
HanXRQChr02g0042761 Helianthus annuus HOM05D002803 ORTHO05D003089 2.5e-06 56.2 79 38.0
Lj5g0014631 Lotus japonicus HOM05D002803 ORTHO05D003089 2.5e-06 56.2 36 58.3
Medtr1g093840 Medicago truncatula HOM05D002803 ORTHO05D003089 2.5e-06 56.2 37 54.1
TPR.G31371 Trifolium pratense HOM05D002803 ORTHO05D003089 2.5e-06 56.2 78 35.9
TPR.G9796 Trifolium pratense HOM05D002803 ORTHO05D003089 2.5e-06 56.2 36 55.6
Cc04_g07570 Coffea canephora HOM05D002803 ORTHO05D003089 3.3e-06 55.8 54 50.0
FvH4_5g12760 Fragaria vesca HOM05D002803 ORTHO05D003089 3.3e-06 55.8 81 38.3
FAN18G3348 Fragaria x ananassa HOM05D002803 ORTHO05D003089 3.3e-06 55.8 81 38.3
FAN18G3648 Fragaria x ananassa HOM05D002803 ORTHO05D003089 3.3e-06 55.8 81 38.3
Lalb_Chr19g0130001 Lupinus albus HOM05D007964 ORTHO05D010090 3.3e-06 55.8 39 59.0
Nitab4.5_0001432g0060 Nicotiana tabacum HOM05D002803 ORTHO05D003089 3.3e-06 55.8 45 51.1
Nitab4.5_0007105g0020 Nicotiana tabacum HOM05D002803 ORTHO05D003089 3.3e-06 55.8 45 51.1
Os01g0111700 Oryza sativa ssp. japonica HOM05D008294 ORTHO05D010468 3.3e-06 55.8 76 34.2
FAN08G1483 Fragaria x ananassa HOM05D002803 ORTHO05D003089 4.3e-06 55.5 81 38.3
Medtr8g035940 Medicago truncatula HOM05D002803 ORTHO05D003089 4.3e-06 55.5 35 60.0
Sc04g0006760 Simmondsia chinensis HOM05D002803 ORTHO05D003089 4.3e-06 55.5 54 40.7
Sopen06g026510 Solanum pennellii HOM05D002803 ORTHO05D003089 4.3e-06 55.5 107 29.0
Zm00001eb334540 Zea mays HOM05D008294 ORTHO05D010468 4.3e-06 55.5 87 31.0
Atru.chr9.745 Acer truncatum HOM05D002803 ORTHO05D003089 5.6e-06 55.1 46 47.8
MSTRG.813 Avicennia marina HOM05D002803 ORTHO05D003089 5.6e-06 55.1 46 47.8
CSS0037901 Camellia sinensis var. sinensis HOM05D002803 ORTHO05D003089 5.6e-06 55.1 84 40.5
FAN13G3198 Fragaria x ananassa HOM05D002803 ORTHO05D003089 5.6e-06 55.1 81 38.3
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 5.6e-06 55.1 47 53.2
Oeu063395.1 Olea europaea HOM05D002803 ORTHO05D003089 5.6e-06 55.1 43 51.2
ATR0053G030 Amborella trichopoda HOM05D002803 ORTHO05D003089 7.3e-06 54.7 41 53.7
ATR0332G013 Amborella trichopoda HOM05D008294 ORTHO05D063631 7.3e-06 54.7 51 45.1
COL.COLO4_29112 Corchorus olitorius HOM05D007964 ORTHO05D010090 7.3e-06 54.7 34 64.7
Aa31LG4G8900 Aethionema arabicum HOM05D007964 ORTHO05D010090 9.5e-06 54.3 38 60.5
AT1G49000 Arabidopsis thaliana HOM05D002803 ORTHO05D003089 9.5e-06 54.3 73 41.1
DCAR_023180 Daucus carota HOM05D002803 ORTHO05D003089 9.5e-06 54.3 99 34.3
Eucgr.K02652 Eucalyptus grandis HOM05D002803 ORTHO05D003089 9.5e-06 54.3 56 41.1
Hma1.2p1_0340F.1_g129940 Hydrangea macrophylla HOM05D002803 ORTHO05D003089 9.5e-06 54.3 54 46.3
Solyc06g069250.2 Solanum lycopersicum HOM05D002803 ORTHO05D003089 9.5e-06 54.3 82 34.1
TPR.G9792 Trifolium pratense HOM05D002803 ORTHO05D003089 9.5e-06 54.3 36 52.8


User provided reference genes

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