Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr17g0343871 Lupinus albus HOM05D005828 ORTHO05D006822 2.0e-29 131.7 65 100.0
Glyma.13G081900 Glycine max HOM05D005828 ORTHO05D006822 7.9e-18 93.2 47 93.6
Glyma.14G162800 Glycine max HOM05D005828 ORTHO05D006822 7.9e-18 93.2 47 93.6
TPR.G8500 Trifolium pratense HOM05D005828 ORTHO05D006822 7.9e-18 93.2 47 93.6
Phvul.008G165500 Phaseolus vulgaris HOM05D005828 ORTHO05D006822 1.8e-17 92.0 47 91.5
Ca_03724_v3 Cicer arietinum L. HOM05D005828 ORTHO05D006822 3.9e-17 90.9 47 91.5
Nn7g37602 Nelumbo nucifera HOM05D005828 ORTHO05D006822 1.1e-16 89.4 47 87.2
Sed0016516 Sechium edule HOM05D005828 ORTHO05D006822 1.1e-16 89.4 47 89.4
Rhsim10G0081200 Rhododendron simsii HOM05D005828 ORTHO05D006822 1.5e-16 89.0 45 93.3
Psat2g078520 Pisum sativum HOM05D005828 ORTHO05D006822 1.9e-16 88.6 46 89.1
CANSAT64G1100 Cannabis sativa HOM05D005828 ORTHO05D006822 3.3e-16 87.8 47 87.2
Actinidia23063 Actinidia chinensis HOM05D005828 ORTHO05D006822 4.3e-16 87.4 47 85.1
ClCG11G015600 Citrullus lanatus HOM05D005828 ORTHO05D006822 4.3e-16 87.4 47 85.1
Cpa.g.sc70.13 Carica papaya HOM05D005828 ORTHO05D006822 7.4e-16 86.7 47 87.2
Dinv40388 Davidia involucrata HOM05D005828 ORTHO05D006822 7.4e-16 86.7 47 87.2
Eucgr.F03768 Eucalyptus grandis HOM05D005828 ORTHO05D006822 7.4e-16 86.7 47 85.1
Nn1g08691 Nelumbo nucifera HOM05D005828 ORTHO05D006822 9.6e-16 86.3 47 85.1
Lsat_1_v5_gn_9_83901 Lactuca sativa HOM05D005828 ORTHO05D006822 1.3e-15 85.9 47 83.0
Lalb_Chr04g0253341 Lupinus albus HOM05D005828 ORTHO05D006822 1.3e-15 85.9 47 85.1
Prupe.1G501700 Prunus persica HOM05D005828 ORTHO05D006822 1.6e-15 85.5 47 85.1
THA.LOC104810143 Tarenaya hassleriana HOM05D005828 ORTHO05D006822 2.8e-15 84.7 47 85.1
CSS0005937 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 3.7e-15 84.3 47 85.1
CiPaw.02G169200 Carya illinoinensis HOM05D005828 ORTHO05D006822 3.7e-15 84.3 47 85.1
Lj1g0023360 Lotus japonicus HOM05D005828 ORTHO05D006822 3.7e-15 84.3 47 89.4
TAR628G1302 Trochodendron aralioides HOM05D005828 ORTHO05D006822 3.7e-15 84.3 44 86.4
GSVIVG01013096001 Vitis vinifera HOM05D005828 ORTHO05D006822 4.8e-15 84.0 47 83.0
Hma1.2p1_0248F.1_g102070 Hydrangea macrophylla HOM05D005828 ORTHO05D006822 6.3e-15 83.6 47 83.0
TWI56G1238 Tripterygium wilfordii HOM05D005828 ORTHO05D006822 8.2e-15 83.2 47 80.9
Aa31LG7G5940 Aethionema arabicum HOM05D005828 ORTHO05D006822 1.1e-14 82.8 47 80.9
AL1G35150 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 1.1e-14 82.8 47 80.9
AL1G35290 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 1.1e-14 82.8 47 80.9
AT1G21930 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 1.1e-14 82.8 47 80.9
Carub.0001s2142 Capsella rubella HOM05D005828 ORTHO05D006822 1.1e-14 82.8 47 80.9
Cc10_g15090 Coffea canephora HOM05D005828 ORTHO05D006822 1.1e-14 82.8 47 83.0
arahy.Tifrunner.gnm1.ann1.IQQ61N Arachis hypogaea HOM05D005828 ORTHO05D006822 1.4e-14 82.4 43 90.7
ECA246G1275 Erigeron canadensis HOM05D005828 ORTHO05D006822 1.4e-14 82.4 47 78.7
MD15G1353400 Malus domestica HOM05D005828 ORTHO05D006822 1.4e-14 82.4 47 80.9
Medtr5g059050 Medicago truncatula HOM05D005828 ORTHO05D006822 1.4e-14 82.4 46 89.1
BcaC06g34917 Brassica carinata HOM05D005828 ORTHO05D006822 1.8e-14 82.0 47 80.9
C07p21820 Brassica napus HOM05D005828 ORTHO05D006822 1.8e-14 82.0 47 80.9
BolC7t42713H Brassica oleracea HOM05D005828 ORTHO05D006822 1.8e-14 82.0 47 80.9
Ciclev10002958m.g Citrus clementina HOM05D005828 ORTHO05D006822 1.8e-14 82.0 47 83.0
Medtr5g058700 Medicago truncatula HOM05D005828 ORTHO05D006822 1.8e-14 82.0 51 84.3
Potri.002G086300 Populus trichocarpa HOM05D005828 ORTHO05D006822 1.8e-14 82.0 45 82.2
CDE01G0185 Ceratophyllum demersum HOM05D005828 ORTHO05D006822 2.4e-14 81.6 46 80.4
AUR62011415 Chenopodium quinoa HOM05D005828 ORTHO05D006822 2.4e-14 81.6 47 80.9
AUR62022881 Chenopodium quinoa HOM05D005828 ORTHO05D006822 2.4e-14 81.6 47 80.9
Migut.K01196 Erythranthe guttata HOM05D005828 ORTHO05D006822 2.4e-14 81.6 47 80.9
HanXRQChr12g0379421 Helianthus annuus HOM05D005828 ORTHO05D006822 2.4e-14 81.6 44 81.8
AT3G42150 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 3.1e-14 81.3 47 78.7
Migut.G00970 Erythranthe guttata HOM05D005828 ORTHO05D006822 3.1e-14 81.3 47 80.9
PGR042G1795 Punica granatum HOM05D005828 ORTHO05D006822 3.1e-14 81.3 47 76.6
SGA_v2.0_scaffold52G18982 Striga asiatica HOM05D005828 ORTHO05D006822 3.1e-14 81.3 47 78.7
EL10Ac9g21807 Beta vulgaris HOM05D005828 ORTHO05D006822 4.1e-14 80.9 47 80.9
CAN.G48.25 Capsicum annuum HOM05D005828 ORTHO05D006822 4.1e-14 80.9 47 80.9
Dinv27340 Davidia involucrata HOM05D005828 ORTHO05D006822 4.1e-14 80.9 47 83.0
QL09p036513 Quercus lobata HOM05D005828 ORTHO05D006822 4.1e-14 80.9 47 85.1
CARHR022310 Cardamine hirsuta HOM05D005828 ORTHO05D006822 5.3e-14 80.5 47 78.7
Gohir.A06G042500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 5.3e-14 80.5 47 85.1
Gohir.D06G043500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 5.3e-14 80.5 47 85.1
Gorai.010G048600 Gossypium raimondii HOM05D005828 ORTHO05D006822 5.3e-14 80.5 47 85.1
Manes.18G074748 Manihot esculenta HOM05D005828 ORTHO05D006822 5.3e-14 80.5 47 76.6
Aqoxy6G00155 Aquilegia oxysepala HOM05D005828 ORTHO05D006822 6.9e-14 80.1 47 78.7
Oeu050902.1 Olea europaea HOM05D005828 ORTHO05D006822 6.9e-14 80.1 47 80.9
Ah.01g019990 Amaranthus hybridus HOM05D005828 ORTHO05D006822 9.0e-14 79.7 47 80.9
Sp1g19470 Schrenkiella parvula HOM05D005828 ORTHO05D006822 9.0e-14 79.7 47 78.7
Migut.C01150 Erythranthe guttata HOM05D005828 ORTHO05D006822 1.5e-13 79.0 47 78.7
Duzib041G0320 Durio zibethinus HOM05D005828 ORTHO05D006822 2.0e-13 78.6 47 83.0
MBI11_g22242_MAGBIO Magnolia biondii HOM05D005828 ORTHO05D006822 2.0e-13 78.6 46 78.3
PSO170G1674 Papaver somniferum HOM05D005828 ORTHO05D006822 2.0e-13 78.6 47 72.3
Peaxi162Scf00241g00022 Petunia axillaris HOM05D005828 ORTHO05D006822 2.0e-13 78.6 47 78.7
Hund16842 Selenicereus undatus HOM05D005828 ORTHO05D006822 2.0e-13 78.6 47 78.7
Sc01g0001360 Simmondsia chinensis HOM05D005828 ORTHO05D006822 2.0e-13 78.6 47 78.7
BraA09t39754Z Brassica rapa HOM05D005828 ORTHO05D006822 2.6e-13 78.2 47 76.6
Thhalv10009188m.g Eutrema salsugineum HOM05D005828 ORTHO05D006822 2.6e-13 78.2 47 76.6
RcHm_v2.0_Chr6g0295391 Rosa chinensis HOM05D005828 ORTHO05D006822 2.6e-13 78.2 47 80.9
Solyc03g093220.3 Solanum lycopersicum HOM05D005828 ORTHO05D006822 2.6e-13 78.2 47 78.7
Sopen03g024020 Solanum pennellii HOM05D005828 ORTHO05D006822 2.6e-13 78.2 47 78.7
Thecc.08G121200 Theobroma cacao HOM05D005828 ORTHO05D006822 2.6e-13 78.2 47 83.0
BcaC05g26118 Brassica carinata HOM05D005828 ORTHO05D006822 3.4e-13 77.8 47 76.6
BcaC05g26120 Brassica carinata HOM05D005828 ORTHO05D006822 3.4e-13 77.8 47 76.6
C05p20980 Brassica napus HOM05D005828 ORTHO05D006822 3.4e-13 77.8 47 76.6
BolC5t30794H Brassica oleracea HOM05D005828 ORTHO05D006822 3.4e-13 77.8 47 76.6
BolC5t30796H Brassica oleracea HOM05D005828 ORTHO05D006822 3.4e-13 77.8 47 76.6
Duzib093G2142 Durio zibethinus HOM05D005828 ORTHO05D006822 3.4e-13 77.8 47 80.9
Atru.chr13.1407 Acer truncatum HOM05D005828 ORTHO05D006822 4.5e-13 77.4 40 90.0
A07p14860 Brassica napus HOM05D005828 ORTHO05D006822 4.5e-13 77.4 47 76.6
BcaB03g14247 Brassica carinata HOM05D005828 ORTHO05D006822 5.9e-13 77.0 47 76.6
BcaB07g32190 Brassica carinata HOM05D005828 ORTHO05D006822 5.9e-13 77.0 47 76.6
FvH4_2g26520 Fragaria vesca HOM05D005828 ORTHO05D006822 7.6e-13 76.6 45 77.8
FAN15G3227 Fragaria x ananassa HOM05D005828 ORTHO05D006822 7.6e-13 76.6 45 77.8
FAN24G3109 Fragaria x ananassa HOM05D005828 ORTHO05D006822 7.6e-13 76.6 45 77.8
Nitab4.5_0002816g0110 Nicotiana tabacum HOM05D005828 ORTHO05D006822 7.6e-13 76.6 47 76.6
A09p42800 Brassica napus HOM05D005828 ORTHO05D006822 1.0e-12 76.3 47 74.5
Nitab4.5_0010023g0030 Nicotiana tabacum HOM05D005828 ORTHO05D006822 1.0e-12 76.3 47 74.5
RhsimUnG0054200 Rhododendron simsii HOM05D005828 ORTHO05D006822 2.9e-12 74.7 65 63.1
unitig_22.g6732 Utricularia gibba HOM05D005828 ORTHO05D006822 2.9e-12 74.7 47 70.2
ATR0021G028 Amborella trichopoda HOM05D005828 ORTHO05D006822 3.8e-12 74.3 47 72.3
BcaB07g32192 Brassica carinata HOM05D005828 ORTHO05D006822 3.8e-12 74.3 47 74.5
Os12g0481200 Oryza sativa ssp. japonica HOM05D005828 ORTHO05D006822 2.5e-11 71.6 47 74.5
CSS0009962 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 5.5e-11 70.5 62 61.3
Zm00001eb318220 Zea mays HOM05D005828 ORTHO05D006822 5.5e-11 70.5 47 72.3
Sabra02G0067700 Salix brachista HOM05D005828 ORTHO05D006822 7.2e-11 70.1 71 54.9
AUR62016643 Chenopodium quinoa HOM05D005828 ORTHO05D006822 9.3e-11 69.7 61 60.7
FAN27G1656 Fragaria x ananassa HOM05D005828 ORTHO05D006822 2.1e-10 68.6 53 66.0
HPP92_010723 Vanilla planifolia HOM05D005828 ORTHO05D006822 4.6e-10 67.4 49 65.3
BcaC07g42575 Brassica carinata HOM05D005828 ORTHO05D006822 7.9e-10 66.6 40 77.5
HPP92_010646 Vanilla planifolia HOM05D005828 ORTHO05D006822 1.9e-08 62.0 49 61.2
Haze_00481 Corylus avellana HOM05D005828 ORTHO05D006822 9.7e-08 59.7 103 39.8
Rhsim02G0128100 Rhododendron simsii HOM05D005828 ORTHO05D006822 9.7e-08 59.7 33 84.8
vmacro15901 Vaccinium macrocarpon HOM05D005828 ORTHO05D006822 2.2e-07 58.5 33 81.8
QL09p035324 Quercus lobata HOM05D005828 ORTHO05D006822 2.8e-07 58.2 50 62.0
PGSC0003DMG400014827 Solanum tuberosum HOM05D005828 ORTHO05D006822 3.7e-07 57.8 34 82.4
MELO3C010460.2 Cucumis melo HOM05D005828 ORTHO05D006822 4.8e-07 57.4 31 87.1
CsaV3_4G028420 Cucumis sativus L. HOM05D005828 ORTHO05D006822 4.8e-07 57.4 35 82.9
DCAR_014107 Daucus carota HOM05D005828 ORTHO05D006822 4.8e-07 57.4 34 79.4
MD08G1168000 Malus domestica HOM05D005828 ORTHO05D006822 8.2e-07 56.6 31 83.9
SalBow1G4500 Salvia bowleyana HOM05D005828 ORTHO05D006822 8.2e-07 56.6 31 83.9
Mapoly0038s0094 Marchantia polymorpha HOM05D005828 ORTHO05D006822 5.3e-06 53.9 44 52.3


User provided reference genes

Program Settings