Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr17g0343251 Lupinus albus HOM05D005200 ORTHO05D005760 4.2e-69 264.6 139 100.0
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 2.9e-49 198.7 141 70.2
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 1.0e-46 190.3 142 69.7
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 3.9e-46 188.3 141 73.0
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 6.6e-46 187.6 140 68.6
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 8.9e-43 177.2 140 65.0
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 6.0e-39 164.5 135 65.9
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 6.0e-39 164.5 138 63.8
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 5.0e-38 161.4 134 61.2
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 6.6e-38 161.0 135 64.4
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 4.7e-36 154.8 147 59.2
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 1.4e-35 153.3 134 56.0
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 1.5e-34 149.8 141 63.8
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 4.4e-34 148.3 141 63.8
Medtr8g023100 Medicago truncatula HOM05D005200 ORTHO05D005760 1.3e-33 146.7 133 66.2
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 4.9e-33 144.8 132 59.1
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 1.7e-30 136.3 140 55.0
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 3.9e-30 135.2 137 51.8
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 5.1e-30 134.8 138 51.4
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 1.2e-26 123.6 118 53.4
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 1.6e-23 113.2 131 48.9
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 6.6e-22 107.8 135 45.9
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 8.6e-22 107.5 135 48.1
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 4.3e-21 105.1 136 44.9
Psat4g165560 Pisum sativum HOM05D005200 ORTHO05D005760 1.4e-19 100.1 97 57.7
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 2.2e-17 92.8 131 41.2
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 3.8e-17 92.0 85 54.1
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 6.4e-17 91.3 133 39.8
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 8.4e-17 90.9 92 50.0
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 1.1e-16 90.5 135 40.7
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 1.9e-16 89.7 125 41.6
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 5.4e-16 88.2 94 50.0
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 1.2e-15 87.0 132 39.4
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 1.6e-15 86.7 109 44.0
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 3.5e-15 85.5 117 45.3
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 4.6e-15 85.1 135 36.3
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 6.0e-15 84.7 138 40.6
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 1.0e-14 84.0 121 47.9
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 1.0e-14 84.0 138 38.4
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 1.0e-14 84.0 137 38.0
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 2.3e-14 82.8 138 39.1
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 5.1e-14 81.6 137 40.1
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 5.1e-14 81.6 137 37.2
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 6.6e-14 81.3 134 40.3
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 8.7e-14 80.9 133 39.1
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 8.7e-14 80.9 112 42.9
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 1.1e-13 80.5 131 38.9
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 3.3e-13 79.0 138 37.0
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 3.3e-13 79.0 130 39.2
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 7.3e-13 77.8 138 39.1
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 9.6e-13 77.4 126 34.9
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.3e-12 77.0 110 43.6
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.3e-12 77.0 131 34.4
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.1e-12 76.3 130 38.5
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 2.1e-12 76.3 140 36.4
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.8e-12 75.9 130 37.7
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 2.8e-12 75.9 110 40.0
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 3.6e-12 75.5 103 41.7
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 5.3e-11 71.6 94 40.4
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 2.0e-10 69.7 81 45.7
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 2.0e-10 69.7 132 37.1
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 2.0e-10 69.7 117 37.6
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 3.4e-10 68.9 94 42.6
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 4.4e-10 68.6 135 33.3
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.7e-09 66.6 90 40.0
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.9e-09 65.9 138 34.1
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.9e-09 65.9 138 34.1
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 8.4e-09 64.3 138 33.3
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 8.4e-09 64.3 138 33.3
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 1.4e-08 63.5 117 37.6
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.4e-08 63.5 127 34.6
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.4e-08 63.5 135 31.9
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 1.4e-08 63.5 112 36.6
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 4.2e-08 62.0 106 37.7
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 4.2e-08 62.0 106 37.7
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 9.3e-08 60.8 88 42.0
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.7e-07 59.3 76 43.4
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 6.0e-07 58.2 99 36.4
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 6.0e-07 58.2 80 37.5
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 1.3e-06 57.0 124 36.3
Hund18641 Selenicereus undatus HOM05D005200 ORTHO05D005760 1.7e-06 56.6 134 38.1
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 2.3e-06 56.2 98 33.7
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 3.0e-06 55.8 103 35.0
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 3.0e-06 55.8 59 42.4
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 3.9e-06 55.5 110 35.5
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 6.6e-06 54.7 91 34.1
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 6.6e-06 54.7 88 38.6
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 8.7e-06 54.3 90 33.3


User provided reference genes

Program Settings