Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 2.1e-36 155.2 80 100.0
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 2.1e-28 128.6 80 82.5
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 2.7e-28 128.3 80 82.5
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 3.9e-27 124.4 80 76.2
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 2.5e-26 121.7 80 77.5
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 3.3e-26 121.3 80 73.8
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 2.2e-25 118.6 80 73.8
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 2.4e-24 115.2 80 72.5
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 5.3e-24 114.0 81 74.1
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 5.5e-21 104.0 78 66.7
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 9.4e-21 103.2 78 65.4
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 2.7e-20 101.7 77 64.9
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.0e-19 99.8 67 73.1
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 1.4e-19 99.4 80 65.0
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 2.3e-19 98.6 80 63.8
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 3.9e-19 97.8 80 61.2
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 6.7e-19 97.1 77 63.6
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 6.7e-19 97.1 80 62.5
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 1.1e-18 96.3 73 61.6
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 1.1e-18 96.3 73 61.6
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 1.5e-18 95.9 79 63.3
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.5e-18 95.9 79 63.3
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.5e-18 95.9 79 63.3
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.5e-18 95.9 79 63.3
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 1.5e-18 95.9 79 62.0
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 2.0e-18 95.5 72 66.7
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.7e-18 94.0 78 61.5
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 7.4e-18 93.6 80 60.0
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 7.4e-18 93.6 135 45.9
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 1.3e-17 92.8 78 59.0
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 1.7e-17 92.4 79 59.5
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 2.2e-17 92.0 78 56.4
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 2.2e-17 92.0 78 57.7
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 2.8e-17 91.7 79 59.5
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 3.7e-17 91.3 73 58.9
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 4.8e-17 90.9 79 58.2
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 1.4e-16 89.4 79 58.2
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 2.4e-16 88.6 77 57.1
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 3.1e-16 88.2 79 59.5
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 5.3e-16 87.4 79 58.2
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 7.0e-16 87.0 66 59.1
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 7.0e-16 87.0 59 66.1
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 7.0e-16 87.0 61 65.6
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 7.0e-16 87.0 79 57.0
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 9.1e-16 86.7 79 55.7
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 9.1e-16 86.7 78 57.7
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 9.1e-16 86.7 74 58.1
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 1.2e-15 86.3 65 60.0
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 1.6e-15 85.9 78 51.3
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 2.6e-15 85.1 79 54.4
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 3.5e-15 84.7 73 56.2
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 3.5e-15 84.7 69 59.4
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 7.7e-15 83.6 62 62.9
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 7.7e-15 83.6 63 60.3
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 1.0e-14 83.2 59 64.4
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 1.0e-14 83.2 74 59.5
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 1.0e-14 83.2 82 56.1
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 1.7e-14 82.4 60 63.3
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 2.9e-14 81.6 62 59.7
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 2.9e-14 81.6 61 62.3
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 3.8e-14 81.3 59 62.7
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 3.8e-14 81.3 59 62.7
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 3.8e-14 81.3 78 55.1
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 6.5e-14 80.5 63 61.9
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 6.5e-14 80.5 60 61.7
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 8.5e-14 80.1 59 61.0
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 8.5e-14 80.1 59 61.0
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 8.5e-14 80.1 64 57.8
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 8.5e-14 80.1 85 50.6
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 1.5e-13 79.3 69 55.1
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.5e-13 79.3 72 51.4
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 1.5e-13 79.3 60 60.0
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 1.5e-13 79.3 68 55.9
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 1.5e-13 79.3 72 50.0
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 1.9e-13 79.0 60 58.3
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 2.5e-13 78.6 60 58.3
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 4.2e-13 77.8 115 43.5
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 5.5e-13 77.4 60 61.7
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 7.2e-13 77.0 68 50.0
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 2.1e-12 75.5 62 53.2
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 2.1e-12 75.5 60 56.7
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.1e-12 75.5 109 45.9
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 3.6e-12 74.7 68 52.9
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.8e-11 72.4 50 64.0
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 5.2e-11 70.9 72 50.0
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 5.2e-11 70.9 63 47.6
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 6.7e-11 70.5 83 45.8
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.3e-10 68.2 57 61.4
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 4.4e-10 67.8 80 47.5
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 9.7e-10 66.6 38 84.2
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 6.3e-09 63.9 43 65.1
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 2.4e-08 62.0 39 69.2
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 2.4e-08 62.0 39 69.2
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 7.7e-07 57.0 42 61.9


User provided reference genes

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