Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 3.7e-205 718.0 370 100.0
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 1.9e-172 609.4 376 86.7
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 7.1e-172 607.4 369 84.8
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 2.7e-171 605.5 370 84.3
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 5.1e-170 601.3 371 86.0
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 1.1e-169 600.1 350 87.1
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 6.2e-168 594.3 377 82.0
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 5.3e-167 591.3 385 81.0
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 6.6e-162 574.3 335 87.2
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 3.4e-158 562.0 350 81.4
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 1.7e-157 559.7 350 81.1
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 6.4e-157 557.8 335 83.6
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 1.1e-156 557.0 350 81.1
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 3.2e-156 555.4 335 82.7
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 3.2e-156 555.4 339 81.7
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 4.2e-156 555.1 335 82.7
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 1.2e-155 553.5 337 82.2
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 3.5e-155 552.0 340 81.5
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 4.6e-155 551.6 335 82.7
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.0e-154 550.4 340 81.5
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 6.7e-154 547.7 340 81.5
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.5e-153 546.6 335 81.8
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.5e-153 546.6 340 80.6
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 1.9e-153 546.2 335 81.5
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 5.6e-153 544.7 350 78.6
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 8.1e-152 540.8 335 80.0
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 2.4e-151 539.3 335 81.2
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 3.1e-151 538.9 313 84.7
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 5.3e-151 538.1 330 82.7
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 2.0e-150 536.2 335 81.5
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 4.5e-150 535.0 335 80.6
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 7.6e-150 534.3 351 78.6
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 7.6e-150 534.3 350 78.3
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 1.7e-149 533.1 348 76.4
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 2.9e-149 532.3 335 79.7
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 2.9e-149 532.3 330 80.6
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 4.9e-149 531.6 348 77.3
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 1.4e-148 530.0 348 75.6
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 1.9e-148 529.6 348 78.4
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 2.5e-148 529.3 396 70.7
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 7.1e-148 527.7 335 78.8
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 1.6e-147 526.6 352 77.0
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.6e-147 526.6 342 77.5
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 2.7e-147 525.8 343 77.0
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 2.7e-147 525.8 351 76.9
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 7.9e-147 524.2 352 76.1
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 1.0e-146 523.9 337 78.6
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 3.9e-146 521.9 329 80.5
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 3.9e-146 521.9 336 79.2
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 3.9e-146 521.9 352 75.9
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 6.7e-146 521.2 332 77.4
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 6.7e-146 521.2 317 81.7
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 1.9e-145 519.6 350 76.6
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 2.5e-145 519.2 350 76.6
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 2.5e-145 519.2 336 78.6
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.5e-145 519.2 342 76.6
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 4.3e-145 518.5 352 75.3
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 5.7e-145 518.1 335 77.9
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 9.6e-145 517.3 335 77.9
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 1.3e-144 516.9 335 77.6
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.6e-144 516.5 347 76.9
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 2.1e-144 516.2 337 77.7
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 2.1e-144 516.2 337 77.7
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 2.8e-144 515.8 336 78.0
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 6.2e-144 514.6 337 77.4
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 6.2e-144 514.6 337 77.4
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.1e-143 513.8 360 72.8
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 4.0e-143 511.9 353 76.2
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 5.3e-143 511.5 346 74.9
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 9.0e-143 510.8 353 75.4
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 1.2e-142 510.4 311 81.4
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 2.6e-142 509.2 317 80.4
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 3.4e-142 508.8 311 81.4
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 2.2e-141 506.1 302 83.4
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 5.0e-141 505.0 313 81.2
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 1.6e-139 500.0 311 79.4
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 6.7e-138 494.6 313 77.0
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 2.2e-136 489.6 356 70.2
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 1.8e-135 486.5 317 78.9
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 2.4e-135 486.1 337 74.5
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 2.4e-135 486.1 313 76.4
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 6.9e-135 484.6 365 73.2
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 9.0e-135 484.2 302 80.8
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 1.2e-134 483.8 361 70.9
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 3.4e-134 482.3 377 71.9
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 9.4e-132 474.2 353 72.2
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 6.1e-131 471.5 304 79.9
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 1.0e-130 470.7 307 77.2
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 4.3e-129 465.3 287 81.9
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 7.4e-129 464.5 282 83.0
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 1.7e-128 463.4 337 73.0
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 2.2e-128 463.0 330 72.7
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 1.2e-126 457.2 315 71.7
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.5e-126 456.8 402 61.7
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 4.5e-126 455.3 284 79.2
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.6e-123 446.8 280 79.6
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 7.9e-123 444.5 331 70.1
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 4.1e-119 432.2 329 70.5
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 2.5e-116 422.9 314 68.2
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 2.0e-110 403.3 324 62.3
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.7e-109 400.2 217 90.3
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 2.5e-108 396.4 331 62.2
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 4.7e-107 392.1 242 82.2
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 1.3e-104 384.0 255 75.3
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 4.0e-98 362.5 221 82.4
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 4.4e-89 332.4 305 57.7
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 8.0e-83 311.6 230 68.3
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 1.2e-81 307.8 316 54.4
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 6.4e-80 302.0 306 51.6
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 1.1e-79 301.2 192 79.2
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.9e-79 300.4 187 79.7
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 1.1e-74 284.6 223 65.9
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 3.4e-73 279.6 220 65.9
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 6.0e-70 268.9 167 82.0
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.9e-68 263.8 354 46.9
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 5.1e-61 239.2 151 77.5
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 6.6e-61 238.8 286 49.3
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 3.0e-53 213.4 160 69.4
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 1.4e-50 204.5 157 66.9
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 2.7e-46 190.3 242 49.2
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.0e-41 174.1 161 55.3
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 4.9e-40 169.5 112 68.8
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.1e-38 164.1 280 35.4
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 3.5e-38 163.3 110 70.0
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 8.7e-37 158.7 263 39.2
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 9.6e-36 155.2 265 39.2
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 1.4e-34 151.4 110 75.5
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 1.1e-31 141.7 101 78.2
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.9e-31 141.0 85 76.5
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 4.2e-31 139.8 140 59.3
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 1.3e-27 128.3 81 81.5
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 6.1e-22 109.4 108 57.4
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.5e-17 94.7 54 75.9
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.5e-17 93.2 59 81.4
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 5.9e-17 92.8 62 69.4
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.3e-16 91.7 113 48.7
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.7e-16 91.3 88 60.2
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.9e-16 90.5 60 76.7
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 8.8e-13 79.0 55 67.3
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 8.2e-11 72.4 41 78.0
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 5.9e-09 66.2 75 46.7
Oeu045873.1 Olea europaea HOM05D005313 ORTHO05D006317 2.1e-06 57.8 34 76.5


User provided reference genes

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