Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr17g0338181 Lupinus albus HOM05D011181 ORTHO05D011525 1.3e-160 569.7 294 100.0
Glyma.20G007700 Glycine max HOM05D011181 ORTHO05D011525 1.2e-60 237.7 298 48.0
VMungo1215G3207 Vigna mungo HOM05D011181 ORTHO05D011525 2.0e-60 236.9 295 49.8
arahy.Tifrunner.gnm1.ann1.1D6R9Y Arachis hypogaea HOM05D011181 ORTHO05D011525 6.2e-54 215.3 338 43.2
Ca_12491_v3 Cicer arietinum L. HOM05D011181 ORTHO05D011525 3.1e-53 213.0 301 45.8
Psat6g097640 Pisum sativum HOM05D011181 ORTHO05D011525 6.9e-53 211.8 310 46.5
arahy.Tifrunner.gnm1.ann1.R46QP0 Arachis hypogaea HOM05D011181 ORTHO05D011525 9.0e-53 211.5 338 42.9
TPR.G18578 Trifolium pratense HOM05D011181 ORTHO05D011525 5.3e-45 185.7 307 44.0
Medtr1g034500 Medicago truncatula HOM05D011181 ORTHO05D011525 1.2e-44 184.5 305 43.0
Medtr2g045700 Medicago truncatula HOM05D011181 ORTHO05D011525 6.3e-38 162.2 288 44.1
Medtr2g045670 Medicago truncatula HOM05D011181 ORTHO05D011525 1.2e-36 157.9 211 49.8
Medtr2g045630 Medicago truncatula HOM05D011181 ORTHO05D011525 7.9e-33 145.2 270 43.0
Duzib052G1011 Durio zibethinus HOM05D011181 ORTHO05D011525 5.9e-20 102.4 259 34.0
FvH4_2g08260 Fragaria vesca HOM05D013780 ORTHO05D011525 7.4e-15 85.5 192 33.9
FAN24G1050 Fragaria x ananassa HOM05D013780 ORTHO05D011525 9.7e-15 85.1 192 34.4
COL.COLO4_32451 Corchorus olitorius HOM05D011181 ORTHO05D011525 1.3e-14 84.7 145 42.1
Potri.005G126000 Populus trichocarpa HOM05D001459 ORTHO05D001359 2.2e-14 84.0 97 47.4
Lj2g0002677 Lotus japonicus HOM05D011181 ORTHO05D011525 2.8e-14 83.6 112 50.9
RcHm_v2.0_Chr6g0263141 Rosa chinensis HOM05D013780 ORTHO05D011525 3.5e-12 76.6 181 32.6
Prupe.8G102100 Prunus persica HOM05D013780 ORTHO05D011525 5.0e-11 72.8 221 32.6
TWI73G0633 Tripterygium wilfordii HOM05D001459 ORTHO05D001359 1.5e-10 71.2 97 41.2
TAR381G1105 Trochodendron aralioides HOM05D001459 ORTHO05D001359 2.5e-10 70.5 82 46.3
Thecc.02G122700 Theobroma cacao HOM05D011181 ORTHO05D011525 3.2e-10 70.1 157 35.7
MBI16_g37292_MAGBIO Magnolia biondii HOM05D001459 ORTHO05D001359 2.7e-09 67.0 84 44.0
MD10G1080800 Malus domestica HOM05D013780 ORTHO05D011525 4.7e-09 66.2 92 41.3
Dinv36055 Davidia involucrata HOM05D001459 ORTHO05D001359 6.1e-09 65.9 109 36.7
GSVIVG01009665001 Vitis vinifera HOM05D001459 ORTHO05D001359 6.1e-09 65.9 82 45.1
FvH4_5g23200 Fragaria vesca HOM05D001459 ORTHO05D001359 8.0e-09 65.5 79 46.8
FAN04G0112 Fragaria x ananassa HOM05D001459 ORTHO05D001359 8.0e-09 65.5 79 46.8
FAN13G2632 Fragaria x ananassa HOM05D001459 ORTHO05D001359 8.0e-09 65.5 79 46.8
FAN18G3381 Fragaria x ananassa HOM05D001459 ORTHO05D001359 8.0e-09 65.5 79 46.8
FAN18G3520 Fragaria x ananassa HOM05D001459 ORTHO05D001359 8.0e-09 65.5 79 46.8
RcHm_v2.0_Chr7g0212131 Rosa chinensis HOM05D001459 ORTHO05D001359 8.0e-09 65.5 79 46.8
Sabra03G0066100 Salix brachista HOM05D001515 ORTHO05D001359 8.0e-09 65.5 97 42.3
PGSC0003DMG400012660 Solanum tuberosum HOM05D001459 ORTHO05D001359 8.0e-09 65.5 67 52.2
Aqoxy3G04023 Aquilegia oxysepala HOM05D001459 ORTHO05D001359 1.0e-08 65.1 89 44.9
BraA05t19961Z Brassica rapa HOM05D001459 ORTHO05D001359 1.0e-08 65.1 77 45.5
Hma1.2p1_1228F.1_g268620 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 1.0e-08 65.1 78 44.9
CSS0014012 Camellia sinensis var. sinensis HOM05D001459 ORTHO05D001359 1.4e-08 64.7 67 52.2
Dinv25272 Davidia involucrata HOM05D001459 ORTHO05D001359 1.4e-08 64.7 98 40.8
Manes.15G191900 Manihot esculenta HOM05D001459 ORTHO05D001359 1.4e-08 64.7 118 36.4
Gorai.003G185700 Gossypium raimondii HOM05D001459 ORTHO05D001359 1.8e-08 64.3 79 45.6
Lj2g0001412 Lotus japonicus HOM05D001459 ORTHO05D001359 1.8e-08 64.3 82 42.7
A05p10210 Brassica napus HOM05D001459 ORTHO05D001359 2.3e-08 63.9 77 44.2
CiPaw.12G068800 Carya illinoinensis HOM05D001459 ORTHO05D001359 2.3e-08 63.9 95 42.1
Gohir.D03G176500 Gossypium hirsutum HOM05D001459 ORTHO05D001359 2.3e-08 63.9 79 45.6
Lsat_1_v5_gn_5_62340 Lactuca sativa HOM05D001459 ORTHO05D001359 2.3e-08 63.9 163 33.7
Sed0024040 Sechium edule HOM05D001459 ORTHO05D001359 2.3e-08 63.9 201 30.3
Glyma.07G160050 Glycine max HOM05D019558 ORTHO05D029759 3.0e-08 63.5 68 47.1
VMungo0251G1353 Vigna mungo HOM05D001459 ORTHO05D001359 3.0e-08 63.5 75 48.0
CSS0041697 Camellia sinensis var. sinensis HOM05D001459 ORTHO05D001359 4.0e-08 63.2 97 40.2
Ciclev10001333m.g Citrus clementina HOM05D001459 ORTHO05D001359 4.0e-08 63.2 96 41.7
Gohir.A03G000030 Gossypium hirsutum HOM05D001459 ORTHO05D001359 4.0e-08 63.2 79 44.3
Thecc.03G311000 Theobroma cacao HOM05D001459 ORTHO05D001359 4.0e-08 63.2 79 45.6
Duzib205G1077 Durio zibethinus HOM05D001459 ORTHO05D001359 5.2e-08 62.8 79 45.6
FAN08G0121 Fragaria x ananassa HOM05D001459 ORTHO05D001359 5.2e-08 62.8 79 45.6
Nitab4.5_0004528g0040 Nicotiana tabacum HOM05D001459 ORTHO05D001359 5.2e-08 62.8 102 41.2
Atru.chr6.1535 Acer truncatum HOM05D001459 ORTHO05D001359 6.7e-08 62.4 79 45.6
Duzib068G0264 Durio zibethinus HOM05D001459 ORTHO05D001359 6.7e-08 62.4 75 46.7
Eucgr.E00223 Eucalyptus grandis HOM05D001459 ORTHO05D001359 6.7e-08 62.4 73 50.7
Gohir.A12G065466 Gossypium hirsutum HOM05D001459 ORTHO05D001359 6.7e-08 62.4 91 40.7
Lj4g0008832 Lotus japonicus HOM05D001459 ORTHO05D001359 6.7e-08 62.4 97 37.1
SGA_v2.0_scaffold33G13393 Striga asiatica HOM05D001459 ORTHO05D001359 8.8e-08 62.0 101 36.6
Zm00001eb411700 Zea mays HOM05D001459 ORTHO05D001359 8.8e-08 62.0 70 48.6
Atru.chr3.534 Acer truncatum HOM05D001459 ORTHO05D001359 1.2e-07 61.6 98 35.7
Lj2g0012038 Lotus japonicus HOM05D001459 ORTHO05D001359 1.2e-07 61.6 79 43.0
PGR042G1020 Punica granatum HOM05D001459 ORTHO05D001359 1.2e-07 61.6 79 45.6
QL11p042781 Quercus lobata HOM05D013780 ORTHO05D011525 1.2e-07 61.6 324 25.6
HPP92_015913 Vanilla planifolia HOM05D001459 ORTHO05D001359 1.2e-07 61.6 78 47.4
HPP92_015942 Vanilla planifolia HOM05D001459 ORTHO05D001359 1.2e-07 61.6 78 47.4
Ca_25167_v3 Cicer arietinum L. HOM05D001459 ORTHO05D001359 1.5e-07 61.2 75 45.3
Medtr5g028850 Medicago truncatula HOM05D001459 ORTHO05D001359 1.5e-07 61.2 75 46.7
Sopen08g001310 Solanum pennellii HOM05D001459 ORTHO05D001359 1.5e-07 61.2 97 41.2
TPR.G10365 Trifolium pratense HOM05D001459 ORTHO05D001359 1.5e-07 61.2 77 44.2
ATR0829G146 Amborella trichopoda HOM05D001459 ORTHO05D001359 2.0e-07 60.8 67 49.3
Dinv42088 Davidia involucrata HOM05D001459 ORTHO05D045162 2.0e-07 60.8 87 43.7
Lalb_Chr03g0025791 Lupinus albus HOM05D011181 ORTHO05D011525 2.0e-07 60.8 299 27.8
Nitab4.5_0000556g0270 Nicotiana tabacum HOM05D001459 ORTHO05D001359 2.0e-07 60.8 101 40.6
Solyc08g005290.3 Solanum lycopersicum HOM05D001459 ORTHO05D001359 2.0e-07 60.8 93 41.9
TPR.G28598 Trifolium pratense HOM05D001459 ORTHO05D001359 2.0e-07 60.8 77 44.2
HanXRQChr03g0069071 Helianthus annuus HOM05D001459 ORTHO05D001359 2.6e-07 60.5 113 35.4
Lj8A322G33 Lonicera japonica HOM05D001459 ORTHO05D001359 2.6e-07 60.5 104 39.4
MBI13_g04497_MAGBIO Magnolia biondii HOM05D001459 ORTHO05D001359 2.6e-07 60.5 94 41.5
Os07g0209800 Oryza sativa ssp. japonica HOM05D001459 ORTHO05D001359 2.6e-07 60.5 97 42.3
TWI09G0088 Tripterygium wilfordii HOM05D001459 ORTHO05D001359 2.6e-07 60.5 97 38.1
Migut.A00608 Erythranthe guttata HOM05D001459 ORTHO05D001359 3.3e-07 60.1 77 45.5
ECA240G2874 Erigeron canadensis HOM05D001459 ORTHO05D001359 4.4e-07 59.7 105 41.0
Lj2A229T41 Lonicera japonica HOM05D001459 ORTHO05D001359 4.4e-07 59.7 99 39.4
PSO170G2342 Papaver somniferum HOM05D001459 ORTHO05D001359 4.4e-07 59.7 82 40.2
SEGI_34798 Sequoiadendron giganteum HOM05D001459 ORTHO05D001359 4.4e-07 59.7 93 39.8
THA.LOC104812761 Tarenaya hassleriana HOM05D001459 ORTHO05D001359 4.4e-07 59.7 72 47.2
Zm00001eb133640 Zea mays HOM05D001459 ORTHO05D001359 4.4e-07 59.7 70 45.7
arahy.Tifrunner.gnm1.ann1.KB1QEP Arachis hypogaea HOM05D001459 ORTHO05D001359 5.7e-07 59.3 96 38.5
Manes.15G192000 Manihot esculenta HOM05D001459 ORTHO05D001359 5.7e-07 59.3 118 34.7
Mapoly0015s0005 Marchantia polymorpha HOM05D001459 ORTHO05D001359 5.7e-07 59.3 97 36.1
PSO782G4644 Papaver somniferum HOM05D001459 ORTHO05D001359 5.7e-07 59.3 73 45.2
unitig_699.g19757 Utricularia gibba HOM05D001459 ORTHO05D001359 5.7e-07 59.3 75 46.7
Duzib264G0166 Durio zibethinus HOM05D001459 ORTHO05D001359 7.5e-07 58.9 95 36.8
Lsat_1_v5_gn_4_153461 Lactuca sativa HOM05D001459 ORTHO05D001359 7.5e-07 58.9 82 41.5
Phvul.002G136000 Phaseolus vulgaris HOM05D001459 ORTHO05D001359 7.5e-07 58.9 73 45.2
TAR366G0001 Trochodendron aralioides HOM05D001459 ORTHO05D001359 7.5e-07 58.9 97 40.2
MSTRG.2753 Avicennia marina HOM05D001459 ORTHO05D001359 9.7e-07 58.5 153 31.4
CANSAT01G1094 Cannabis sativa HOM05D001459 ORTHO05D001359 9.7e-07 58.5 82 42.7
Eucgr.H01256 Eucalyptus grandis HOM05D001459 ORTHO05D001359 9.7e-07 58.5 82 41.5
MBI04_g20972_MAGBIO Magnolia biondii HOM05D001459 ORTHO05D001359 9.7e-07 58.5 73 45.2
Oeu027098.1 Olea europaea HOM05D001459 ORTHO05D001359 9.7e-07 58.5 72 48.6
PSO063G5354 Papaver somniferum HOM05D001459 ORTHO05D001359 9.7e-07 58.5 70 45.7
PSO700G0112 Papaver somniferum HOM05D001459 ORTHO05D001359 9.7e-07 58.5 82 39.0
Sabra07G0025300 Salix brachista HOM05D001459 ORTHO05D001359 9.7e-07 58.5 97 38.1
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 9.7e-07 58.5 99 41.4
C04p64340 Brassica napus HOM05D001459 ORTHO05D001359 1.3e-06 58.2 66 48.5
CSS0021144 Camellia sinensis var. sinensis HOM05D001459 ORTHO05D001359 1.3e-06 58.2 98 38.8
CAN.G137.28 Capsicum annuum HOM05D001459 ORTHO05D001359 1.3e-06 58.2 77 42.9
Duzib147G1182 Durio zibethinus HOM05D001459 ORTHO05D001359 1.3e-06 58.2 98 35.7
Glyma.01G013600 Glycine max HOM05D001459 ORTHO05D001359 1.3e-06 58.2 73 43.8
Lsat_1_v5_gn_3_20761 Lactuca sativa HOM05D001459 ORTHO05D001359 1.3e-06 58.2 72 47.2
MD16G1279200 Malus domestica HOM05D001459 ORTHO05D001359 1.3e-06 58.2 79 43.0
VMungo1215G1612 Vigna mungo HOM05D001459 ORTHO05D001359 1.3e-06 58.2 73 43.8
CsaV3_6G046080 Cucumis sativus L. HOM05D001459 ORTHO05D001359 1.7e-06 57.8 97 37.1
Hma1.2p1_0870F.1_g230920 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 1.7e-06 57.8 72 47.2
Nn4g24488 Nelumbo nucifera HOM05D001459 ORTHO05D001359 1.7e-06 57.8 87 42.5
Nn5g29527 Nelumbo nucifera HOM05D001459 ORTHO05D001359 1.7e-06 57.8 97 36.1
Pp3c21_5710 Physcomitrium patens HOM05D001459 ORTHO05D001359 1.7e-06 57.8 107 37.4
Pp3c21_5770 Physcomitrium patens HOM05D001459 ORTHO05D001359 1.7e-06 57.8 107 37.4
Rhsim07G0132900 Rhododendron simsii HOM05D001459 ORTHO05D001359 1.7e-06 57.8 97 39.2
BcaB04g17999 Brassica carinata HOM05D001459 ORTHO05D001359 2.2e-06 57.4 79 43.0
CiPaw.11G098900 Carya illinoinensis HOM05D001459 ORTHO05D001359 2.2e-06 57.4 77 42.9
Hma1.2p1_1569F.1_g291140 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 2.2e-06 57.4 77 44.2
Lj3g0006833 Lotus japonicus HOM05D022472 ORTHO05D025657 2.2e-06 57.4 184 33.7
Peaxi162Scf00045g00325 Petunia axillaris HOM05D001459 ORTHO05D001359 2.2e-06 57.4 70 45.7
Psat0s1431g0080 Pisum sativum HOM05D001459 ORTHO05D001359 2.2e-06 57.4 67 46.3
Potri.003G097600 Populus trichocarpa HOM05D001459 ORTHO05D001359 2.2e-06 57.4 97 37.1
Zm00001eb303220 Zea mays HOM05D001459 ORTHO05D001359 2.2e-06 57.4 70 48.6
BolC5t31879H Brassica oleracea HOM05D001459 ORTHO05D001359 2.8e-06 57.0 98 36.7
Cfa012529 Carpinus fangiana HOM05D001459 ORTHO05D001359 2.8e-06 57.0 67 47.8
Haze_08134 Corylus avellana HOM05D001459 ORTHO05D001359 2.8e-06 57.0 67 47.8
ECA238G4073 Erigeron canadensis HOM05D001459 ORTHO05D001359 2.8e-06 57.0 56 51.8
Pp3c18_16260 Physcomitrium patens HOM05D001459 ORTHO05D001359 2.8e-06 57.0 101 37.6
Sp1g27810 Schrenkiella parvula HOM05D001459 ORTHO05D001359 2.8e-06 57.0 67 47.8
Actinidia14776 Actinidia chinensis HOM05D001459 ORTHO05D001359 3.7e-06 56.6 98 40.8
Glyma.09G208500 Glycine max HOM05D001459 ORTHO05D001359 3.7e-06 56.6 138 33.3
TAR628G1708 Trochodendron aralioides HOM05D001459 ORTHO05D001359 3.7e-06 56.6 97 37.1
Pp3c18_19240 Physcomitrium patens HOM05D001459 ORTHO05D001359 4.8e-06 56.2 99 34.3
PRCOL_00000180 Prasinoderma coloniale HOM05D001459 ORTHO05D001359 4.8e-06 56.2 77 41.6
A09p34050 Brassica napus HOM05D001459 ORTHO05D001359 6.3e-06 55.8 79 40.5
BraA09t38951Z Brassica rapa HOM05D001459 ORTHO05D001359 6.3e-06 55.8 79 40.5
Cfa004979 Carpinus fangiana HOM05D013780 ORTHO05D011525 6.3e-06 55.8 92 41.3
DCAR_008218 Daucus carota HOM05D001459 ORTHO05D001359 6.3e-06 55.8 70 44.3
Potri.007G029400 Populus trichocarpa HOM05D001459 ORTHO05D001359 6.3e-06 55.8 97 37.1
Prupe.5G027000 Prunus persica HOM05D001459 ORTHO05D001359 6.3e-06 55.8 77 42.9
QL12p001122 Quercus lobata HOM05D001459 ORTHO05D001359 6.3e-06 55.8 111 38.7
Rhsim11G0032400 Rhododendron simsii HOM05D001459 ORTHO05D001359 6.3e-06 55.8 67 47.8
RhsimUnG0059100 Rhododendron simsii HOM05D001459 ORTHO05D001359 6.3e-06 55.8 67 47.8
arahy.Tifrunner.gnm1.ann1.Z1Y8P7 Arachis hypogaea HOM05D001459 ORTHO05D001359 8.2e-06 55.5 130 32.3
BcaC02g11657 Brassica carinata HOM05D001459 ORTHO05D001359 8.2e-06 55.5 77 40.3
C04p12660 Brassica napus HOM05D001459 ORTHO05D001359 8.2e-06 55.5 77 40.3
C05p31550 Brassica napus HOM05D001459 ORTHO05D001359 8.2e-06 55.5 98 35.7
Lalb_Chr05g0215701 Lupinus albus HOM05D001459 ORTHO05D001359 8.2e-06 55.5 72 44.4
Lalb_Chr16g0381001 Lupinus albus HOM05D001459 ORTHO05D001359 8.2e-06 55.5 72 44.4
Solyc02g062950.3 Solanum lycopersicum HOM05D001459 ORTHO05D001359 8.2e-06 55.5 82 39.0
Sopen02g013990 Solanum pennellii HOM05D001459 ORTHO05D001359 8.2e-06 55.5 82 39.0


User provided reference genes

Program Settings