Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 4.9e-257 890.6 433 100.0
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 6.3e-196 687.6 433 77.1
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 1.4e-195 686.4 413 78.5
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 1.7e-193 679.5 413 77.0
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 1.5e-192 676.4 424 75.0
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 1.9e-192 676.0 428 76.4
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 9.4e-192 673.7 423 76.8
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 3.6e-191 671.8 431 74.0
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 3.6e-191 671.8 423 75.7
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 3.6e-191 671.8 433 75.3
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 1.8e-190 669.5 418 75.6
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 2.3e-190 669.1 412 76.9
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 3.0e-190 668.7 437 73.9
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 5.2e-190 667.9 435 72.6
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 2.6e-189 665.6 424 74.5
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 4.4e-189 664.8 433 75.1
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 5.7e-189 664.5 430 74.7
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 7.5e-189 664.1 435 74.3
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.7e-188 662.9 435 74.3
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.7e-188 662.9 435 74.0
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 2.2e-188 662.5 415 74.2
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 4.8e-188 661.4 428 72.4
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 6.3e-188 661.0 433 74.1
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 8.3e-188 660.6 419 75.2
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 1.1e-187 660.2 433 71.8
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 2.4e-187 659.1 429 73.9
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 9.1e-187 657.1 430 71.6
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 1.6e-186 656.4 434 73.7
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 3.5e-186 655.2 420 73.8
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 4.5e-186 654.8 421 75.5
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 4.5e-186 654.8 421 75.5
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 3.8e-185 651.7 410 75.1
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 3.8e-185 651.7 419 75.4
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 6.5e-185 651.0 416 73.6
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 3.2e-184 648.7 420 73.1
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 4.0e-182 641.7 414 72.5
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 6.8e-182 641.0 426 73.2
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 1.2e-181 640.2 419 71.6
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 3.4e-181 638.6 424 71.9
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 1.7e-180 636.3 415 71.3
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 3.7e-180 635.2 414 72.2
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 3.7e-180 635.2 421 71.0
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 6.3e-180 634.4 434 70.5
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 6.3e-180 634.4 434 69.4
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.4e-179 633.3 419 71.1
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 4.1e-179 631.7 415 70.8
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 5.4e-179 631.3 415 71.8
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 3.5e-178 628.6 419 70.9
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 4.5e-178 628.2 415 70.8
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 1.7e-177 626.3 431 69.8
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 2.3e-177 625.9 430 68.6
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 6.6e-177 624.4 418 71.1
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 1.5e-176 623.2 415 71.6
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 7.2e-176 620.9 433 69.1
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 1.2e-175 620.2 434 70.5
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 8.0e-175 617.5 414 71.3
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 8.0e-175 617.5 427 68.6
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 8.0e-175 617.5 413 70.7
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 1.0e-174 617.1 414 71.7
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 1.0e-174 617.1 440 69.3
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 1.4e-174 616.7 461 65.9
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 1.8e-174 616.3 414 71.7
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 2.3e-174 615.9 419 70.4
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 2.3e-174 615.9 418 71.1
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 4.0e-174 615.1 419 70.6
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 4.0e-174 615.1 431 69.1
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 4.0e-174 615.1 418 69.1
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 5.2e-174 614.8 431 68.7
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 6.8e-174 614.4 422 69.2
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 1.2e-173 613.6 419 70.9
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.5e-173 613.2 408 69.4
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 2.6e-173 612.5 419 70.6
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.6e-173 612.5 418 68.7
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 4.4e-173 611.7 414 71.0
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 7.5e-173 610.9 414 71.7
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 7.5e-173 610.9 415 71.1
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 9.8e-173 610.5 419 70.6
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 1.3e-172 610.1 419 70.9
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 2.8e-172 609.0 414 70.8
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 4.9e-172 608.2 419 68.3
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 6.3e-172 607.8 424 68.9
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 2.0e-170 602.8 411 70.1
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 7.8e-170 600.9 413 68.3
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 1.0e-169 600.5 416 68.0
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 1.3e-169 600.1 414 70.3
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 1.3e-169 600.1 414 70.3
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 1.8e-166 589.7 411 68.6
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 8.9e-166 587.4 416 68.3
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 2.0e-165 586.3 425 66.6
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 2.0e-165 586.3 414 67.6
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.4e-165 585.1 420 68.6
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 2.9e-164 582.4 434 65.0
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 4.9e-164 581.6 411 67.9
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.4e-163 579.3 433 64.4
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 4.1e-163 578.6 436 64.4
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 5.4e-163 578.2 432 66.2
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 9.2e-163 577.4 419 64.9
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 1.2e-162 577.0 433 66.3
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 7.3e-160 567.8 416 64.7
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 7.3e-160 567.8 416 64.7
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 9.5e-160 567.4 429 63.2
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 4.4e-157 558.5 407 66.3
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 5.8e-157 558.1 437 62.2
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 1.4e-155 553.5 426 62.9
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 2.1e-154 549.7 414 65.9
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 4.3e-152 542.0 355 72.4
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 8.1e-151 537.7 417 60.2
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 9.9e-149 530.8 410 61.2
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.2e-148 529.6 439 59.5
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 1.1e-147 527.3 428 58.4
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.1e-147 527.3 418 61.2
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 5.1e-145 518.5 418 60.8
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 7.3e-144 514.6 420 56.7
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 5.2e-142 508.4 419 55.1
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.2e-141 507.3 452 55.1
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.7e-140 503.4 422 60.2
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 1.3e-137 493.8 307 77.5
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 4.4e-133 478.8 418 54.1
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 6.4e-132 474.9 394 56.1
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 2.4e-123 446.4 404 56.9
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 2.7e-122 443.0 434 51.6
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 7.9e-114 414.8 411 50.6
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.3e-113 414.1 415 54.0
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 1.6e-111 407.1 295 64.4
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 3.1e-110 402.9 415 53.0
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 9.0e-110 401.4 415 46.7
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 5.0e-108 395.6 414 46.9
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 7.1e-107 391.7 348 54.6
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 9.3e-107 391.3 275 66.5
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 1.4e-99 367.5 225 78.2
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 3.9e-89 332.8 410 42.0
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.2e-85 321.2 290 54.1
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 2.6e-85 320.1 262 61.1
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 2.9e-84 316.6 239 64.9
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 2.6e-56 223.8 153 68.0
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 3.9e-52 209.9 157 64.3
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.5e-51 207.2 311 37.6
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 8.9e-49 198.7 137 65.7
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.0e-45 187.6 129 65.9
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 2.5e-43 180.6 113 70.8
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 4.0e-41 173.3 139 61.9
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 1.3e-39 168.3 135 64.4
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.7e-39 167.9 193 49.7
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 5.4e-38 162.9 168 54.8
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 4.3e-35 153.3 405 26.4
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 2.6e-32 144.1 156 52.6
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 1.7e-20 104.8 78 64.1
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.3e-20 104.4 76 64.5
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 8.7e-20 102.4 74 64.9
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 5.6e-19 99.8 91 60.4
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 1.4e-17 95.1 71 62.0
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 1.8e-17 94.7 100 50.0
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 4.0e-17 93.6 82 56.1
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 4.4e-16 90.1 89 48.3
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 3.2e-14 84.0 72 52.8
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 3.5e-13 80.5 60 66.7
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 1.0e-12 79.0 68 58.8
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 6.6e-12 76.3 62 59.7
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 1.1e-11 75.5 58 65.5
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 1.8e-09 68.2 104 36.5
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 2.6e-08 64.3 58 58.6
Cpa.g.c45316 Carica papaya HOM05D004203 ORTHO05D004830 2.2e-07 61.2 42 66.7
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 2.9e-07 60.8 55 56.4
Pp3c14_4390 Physcomitrium patens HOM05D004203 ORTHO05D004830 3.8e-07 60.5 73 35.6
SEGI_15796 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 7.1e-06 56.2 58 50.0


User provided reference genes

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