Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 1.9e-158 562.8 343 100.0
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 1.9e-134 483.0 342 70.2
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 2.4e-134 482.6 341 72.7
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 1.3e-132 476.9 343 69.7
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 6.6e-132 474.6 343 72.9
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 1.5e-131 473.4 342 70.8
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 2.8e-130 469.2 341 71.0
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 6.9e-129 464.5 341 75.4
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 6.9e-129 464.5 341 69.5
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 9.0e-129 464.2 341 68.6
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.5e-128 463.4 341 67.7
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 5.8e-128 461.5 341 72.1
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 7.6e-128 461.1 341 66.9
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 7.6e-128 461.1 341 68.0
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 7.6e-128 461.1 344 68.0
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 2.2e-127 459.5 341 71.3
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 8.4e-127 457.6 343 73.5
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.1e-126 457.2 343 69.4
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 1.1e-126 457.2 341 68.0
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.4e-126 456.1 343 69.1
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 2.4e-126 456.1 341 66.0
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 3.2e-126 455.7 349 67.9
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 4.2e-126 455.3 343 65.0
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 5.4e-126 454.9 342 65.8
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 7.1e-126 454.5 341 66.3
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 4.6e-125 451.8 342 66.1
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 1.0e-124 450.7 343 73.8
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.0e-124 449.1 341 66.0
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 3.0e-124 449.1 341 65.7
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 3.0e-124 449.1 341 76.0
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 5.1e-124 448.4 342 68.1
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 6.7e-124 448.0 340 71.2
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 8.7e-124 447.6 341 76.0
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 8.7e-124 447.6 341 65.7
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 8.7e-124 447.6 342 72.8
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 3.3e-123 445.7 342 63.7
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 4.3e-123 445.3 341 70.1
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 5.6e-123 444.9 343 71.7
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.4e-123 444.5 341 65.1
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.4e-123 444.5 359 62.1
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.6e-123 444.1 341 72.4
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 9.6e-123 444.1 340 68.2
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 1.3e-122 443.7 341 70.4
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.6e-122 443.4 341 72.1
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.6e-122 443.4 343 62.4
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 3.7e-122 442.2 343 73.2
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 4.8e-122 441.8 341 66.3
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 6.2e-122 441.4 338 68.0
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 6.2e-122 441.4 344 74.4
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 8.1e-122 441.0 344 73.5
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 1.1e-121 440.7 343 68.8
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.1e-121 440.7 341 66.3
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.1e-121 440.7 344 67.4
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 1.4e-121 440.3 344 66.6
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 3.1e-121 439.1 341 70.1
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 3.1e-121 439.1 341 72.4
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 3.1e-121 439.1 341 74.8
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 6.9e-121 438.0 343 65.6
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 6.9e-121 438.0 341 74.2
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.9e-121 438.0 341 71.8
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 9.0e-121 437.6 341 71.0
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.5e-120 436.8 343 74.9
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 2.0e-120 436.4 346 64.5
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 2.6e-120 436.0 344 73.0
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 2.6e-120 436.0 343 64.4
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 5.8e-120 434.9 344 67.7
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 4.9e-119 431.8 345 69.3
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 4.9e-119 431.8 345 69.3
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 6.4e-119 431.4 341 75.7
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 8.4e-119 431.0 342 70.5
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 1.1e-118 430.6 341 63.0
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 1.4e-118 430.3 343 71.1
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 1.9e-118 429.9 341 73.3
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 1.9e-118 429.9 341 68.3
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 1.9e-118 429.9 341 71.0
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 2.5e-118 429.5 342 71.3
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.2e-118 429.1 344 72.1
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 4.2e-118 428.7 340 64.4
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 9.3e-118 427.6 341 64.5
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 1.2e-117 427.2 345 63.8
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.7e-117 426.0 341 71.0
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 3.5e-117 425.6 343 73.5
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 4.6e-117 425.2 343 66.8
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 7.9e-117 424.5 341 70.1
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 7.9e-117 424.5 338 62.1
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 1.3e-116 423.7 343 67.9
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 5.1e-116 421.8 338 68.9
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 8.7e-116 421.0 343 68.5
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 1.1e-115 420.6 341 71.0
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 2.5e-115 419.5 341 68.0
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 4.3e-115 418.7 340 69.1
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 4.3e-115 418.7 341 66.0
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 5.6e-115 418.3 343 68.2
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 7.4e-115 417.9 340 70.0
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 1.3e-114 417.2 343 70.3
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.6e-114 416.8 340 70.3
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 2.8e-114 416.0 344 71.8
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 8.2e-114 414.5 341 69.2
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 1.5e-112 410.2 369 57.7
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 2.6e-112 409.5 345 63.8
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 5.8e-112 408.3 340 67.1
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 5.8e-112 408.3 341 68.3
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.3e-111 407.1 343 61.2
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 2.2e-111 406.4 441 51.5
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.2e-111 406.4 347 70.0
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 3.8e-111 405.6 324 61.1
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 4.9e-111 405.2 345 70.7
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 1.6e-109 400.2 341 59.8
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 7.9e-109 397.9 340 61.8
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 6.7e-108 394.8 425 65.4
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 6.3e-106 388.3 344 59.6
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.8e-105 386.7 340 60.3
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.4e-105 386.3 354 62.7
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 3.1e-105 386.0 307 63.8
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 4.5e-104 382.1 340 55.0
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 2.9e-103 379.4 344 62.2
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 5.0e-103 378.6 340 55.6
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 6.5e-103 378.3 305 71.5
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.9e-102 376.7 344 63.7
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 3.2e-102 375.9 342 61.4
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 4.2e-102 375.6 348 54.9
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 1.6e-101 373.6 340 54.4
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 3.9e-100 369.0 344 53.8
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 6.3e-98 361.7 296 72.0
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 9.1e-97 357.8 231 75.3
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 2.9e-95 352.8 293 64.2
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.1e-94 350.9 342 51.8
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 1.1e-94 350.9 341 59.8
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.9e-94 350.1 354 63.8
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.5e-94 349.7 338 51.5
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 6.1e-93 345.1 351 54.4
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 3.9e-92 342.4 339 57.8
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.9e-92 342.4 293 61.1
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 5.1e-92 342.0 287 63.1
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 1.5e-91 340.5 292 68.5
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 1.5e-91 340.5 342 49.7
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 2.6e-83 313.2 285 66.3
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 2.2e-82 310.1 289 66.1
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 5.3e-81 305.4 295 67.8
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.2e-80 304.3 341 49.0
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 1.2e-77 294.3 187 77.5
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 1.5e-75 287.3 341 41.9
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 4.8e-74 282.3 279 62.0
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 8.3e-74 281.6 145 91.0
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 1.1e-73 281.2 347 47.0
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 1.2e-72 277.7 239 69.0
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 1.2e-72 277.7 239 65.7
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 2.7e-72 276.6 353 39.1
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 5.0e-71 272.3 239 58.6
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 4.2e-70 269.2 241 65.6
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.6e-69 266.2 220 63.6
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 2.3e-68 263.5 240 66.7
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 8.8e-68 261.5 239 61.5
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 7.5e-67 258.5 346 40.5
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 1.3e-66 257.7 239 71.1
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 1.1e-65 254.6 224 62.5
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 3.1e-65 253.1 228 53.1
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 5.9e-64 248.8 228 53.9
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 1.0e-63 248.1 338 44.4
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 6.3e-58 228.8 130 81.5
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.8e-52 208.8 139 71.2
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 6.8e-52 208.8 229 47.6
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 7.5e-51 205.3 229 44.5
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 4.3e-46 189.5 105 82.9
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 1.5e-30 137.9 83 78.3
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 1.1e-28 131.7 77 75.3
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.1e-28 130.2 131 55.7
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.6e-27 125.6 107 61.7
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 4.3e-22 109.8 74 67.6
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.3e-21 108.2 341 24.6
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.3e-18 98.2 57 77.2
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.4e-17 94.7 56 67.9
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 4.8e-13 79.7 106 34.0
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 2.4e-12 77.4 133 38.3
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 1.9e-09 67.8 75 68.0
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 4.2e-09 66.6 45 68.9


User provided reference genes

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