Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 1.0e-137 493.4 254 100.0
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 3.7e-103 378.6 231 88.3
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 6.3e-103 377.9 229 88.6
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 1.0e-100 370.5 211 88.2
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 2.1e-98 362.8 224 85.7
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 6.1e-98 361.3 200 88.5
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 1.8e-97 359.8 229 82.1
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 1.1e-96 357.1 228 83.3
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 5.7e-96 354.8 212 84.0
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 2.2e-95 352.8 225 82.7
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 1.5e-93 346.7 225 77.3
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 2.0e-93 346.3 230 75.7
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.0e-93 346.3 225 78.2
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 2.6e-93 345.9 228 76.3
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 5.9e-93 344.7 229 76.4
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.0e-92 344.0 224 77.7
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.7e-92 343.2 229 79.9
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 5.0e-92 341.7 232 74.6
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 1.1e-91 340.5 220 78.2
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 1.4e-91 340.1 210 81.0
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.9e-91 339.7 225 77.3
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 3.2e-91 339.0 232 80.2
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 5.5e-91 338.2 226 75.2
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 7.2e-91 337.8 227 78.9
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 7.2e-91 337.8 211 79.6
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 7.2e-91 337.8 211 81.0
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 2.1e-90 336.3 212 82.1
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 4.7e-90 335.1 225 75.1
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 6.1e-90 334.7 211 78.2
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 6.1e-90 334.7 211 78.2
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 6.1e-90 334.7 211 78.2
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 1.4e-89 333.6 213 79.3
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.8e-89 333.2 213 79.8
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 3.0e-89 332.4 232 78.4
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 5.1e-89 331.6 213 77.5
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 1.1e-88 330.5 211 79.6
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 2.6e-88 329.3 234 73.9
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.6e-88 329.3 234 73.9
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.3e-88 328.9 212 79.7
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.3e-88 328.9 213 78.9
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 3.3e-88 328.9 234 73.9
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 4.4e-88 328.6 204 80.9
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.7e-88 328.2 236 76.3
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.7e-88 328.2 236 76.3
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 7.4e-88 327.8 211 76.8
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.3e-87 327.0 209 77.5
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.3e-87 327.0 234 73.5
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 1.7e-87 326.6 215 77.2
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.2e-87 326.2 234 73.5
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.2e-87 326.2 234 73.5
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 3.7e-87 325.5 215 76.3
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 3.7e-87 325.5 230 72.6
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 4.8e-87 325.1 223 76.2
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 8.2e-87 324.3 211 75.8
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 2.4e-86 322.8 215 75.3
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 7.0e-86 321.2 214 76.2
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 7.0e-86 321.2 210 76.7
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.2e-85 320.5 229 75.5
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 2.0e-85 319.7 211 74.9
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 8.5e-84 314.3 229 74.7
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 8.5e-84 314.3 210 75.2
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.1e-83 313.9 211 74.4
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 2.5e-83 312.8 237 72.6
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 2.1e-82 309.7 234 73.1
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 1.8e-81 306.6 209 71.8
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 4.0e-81 305.4 208 75.0
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 4.0e-81 305.4 209 71.8
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 8.8e-81 304.3 211 75.4
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 8.8e-81 304.3 211 75.4
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 8.8e-81 304.3 225 72.0
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 2.6e-80 302.8 241 67.6
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 1.3e-79 300.4 232 66.4
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.3e-79 300.4 209 71.8
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 1.1e-78 297.4 233 70.0
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 3.1e-78 295.8 232 67.2
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 3.1e-78 295.8 215 68.8
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 5.3e-78 295.0 205 72.2
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.0e-77 293.1 209 70.8
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 4.5e-77 292.0 205 71.7
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 1.0e-76 290.8 227 67.0
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 3.8e-76 288.9 211 69.7
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 2.5e-75 286.2 200 73.5
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 7.2e-75 284.6 222 70.3
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 9.4e-75 284.3 196 71.9
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 2.7e-74 282.7 222 69.8
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 3.6e-74 282.3 201 68.2
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 4.7e-74 282.0 204 66.7
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 6.1e-74 281.6 203 69.0
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 1.4e-73 280.4 206 67.0
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.8e-73 280.0 191 70.7
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 6.8e-73 278.1 204 69.1
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 1.2e-72 277.3 204 65.7
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.3e-71 273.9 219 63.5
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.2e-71 273.1 200 66.5
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 1.1e-70 270.8 208 67.8
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 4.1e-70 268.9 220 64.1
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 7.0e-70 268.1 226 61.1
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 1.2e-69 267.3 206 68.0
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 2.0e-69 266.5 208 66.3
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 2.7e-69 266.2 208 66.3
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 2.7e-69 266.2 208 66.3
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 2.7e-69 266.2 208 66.3
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 2.7e-69 266.2 228 62.7
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 3.5e-69 265.8 213 62.9
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 3.5e-69 265.8 206 68.0
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 3.5e-69 265.8 233 61.8
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 5.9e-69 265.0 231 62.8
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 5.9e-69 265.0 228 62.3
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 1.0e-68 264.2 231 61.9
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 1.0e-68 264.2 231 61.9
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 1.0e-68 264.2 231 61.9
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 1.3e-68 263.8 231 61.9
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 2.2e-68 263.1 236 61.4
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 2.2e-68 263.1 231 61.9
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 6.5e-68 261.5 189 66.7
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 4.2e-67 258.8 205 67.8
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.6e-66 256.9 233 60.5
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 8.0e-66 254.6 235 56.2
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 1.5e-64 250.4 195 68.2
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.5e-64 250.4 231 63.6
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 2.0e-64 250.0 199 62.3
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.7e-63 246.9 198 63.1
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 4.9e-63 245.4 199 60.8
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 3.8e-60 235.7 221 58.4
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 1.1e-59 234.2 219 61.2
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 3.0e-57 226.1 144 75.7
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 2.0e-56 223.4 166 69.3
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 1.8e-54 216.9 176 65.3
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 4.6e-53 212.2 245 52.2
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.0e-52 211.1 199 51.8
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 2.5e-51 206.5 168 62.5
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 1.4e-46 190.7 121 78.5
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 2.8e-42 176.4 127 70.9
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.7e-42 175.6 197 50.3
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 3.1e-41 172.9 122 64.8
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 6.0e-37 158.7 103 68.0
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 1.0e-36 157.9 104 73.1
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 1.5e-35 154.1 103 70.9
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 9.6e-19 98.2 62 72.6
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 8.1e-18 95.1 62 77.4
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 1.5e-08 64.3 190 25.3
Mapoly0062s0070 Marchantia polymorpha HOM05D005580 ORTHO05D006395 3.4e-08 63.2 185 25.9
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 5.8e-08 62.4 172 25.0


User provided reference genes

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