Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 4.9e-70 268.1 178 100.0
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 4.9e-62 241.5 178 87.1
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 1.1e-61 240.4 178 89.3
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.9e-61 239.6 178 88.2
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 4.2e-61 238.4 178 89.3
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 2.1e-60 236.1 178 87.6
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 2.1e-60 236.1 175 89.1
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 4.6e-60 235.0 178 88.2
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.0e-59 233.8 178 86.5
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 2.5e-58 229.2 177 85.3
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 7.3e-58 227.6 177 86.4
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 1.3e-57 226.9 177 84.7
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 1.6e-57 226.5 177 83.6
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 1.6e-57 226.5 174 80.5
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 1.8e-56 223.0 177 83.6
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 1.5e-55 219.9 178 81.5
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 4.5e-55 218.4 176 81.2
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 1.3e-54 216.9 176 62.5
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.7e-54 216.5 175 84.0
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 1.7e-54 216.5 175 84.0
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 4.9e-54 214.9 177 83.1
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 4.9e-54 214.9 176 84.7
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 6.4e-54 214.5 174 84.5
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 1.1e-53 213.8 179 79.3
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.1e-53 213.8 177 60.5
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 1.4e-53 213.4 177 80.2
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.9e-53 213.0 175 83.4
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 1.9e-53 213.0 177 80.8
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 9.3e-53 210.7 177 79.1
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 9.3e-53 210.7 177 79.1
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 1.2e-52 210.3 177 80.2
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 1.6e-52 209.9 177 76.3
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 2.1e-52 209.5 177 80.8
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 2.1e-52 209.5 174 81.6
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 2.1e-52 209.5 174 82.2
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 2.7e-52 209.1 174 81.0
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 6.0e-52 208.0 177 80.8
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 6.0e-52 208.0 174 82.2
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 7.9e-52 207.6 174 81.0
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 7.9e-52 207.6 174 81.0
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 1.0e-51 207.2 177 80.8
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 1.3e-51 206.8 180 78.3
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 1.8e-51 206.5 174 81.6
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 1.8e-51 206.5 175 80.6
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.3e-51 206.1 178 79.2
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 2.3e-51 206.1 176 80.1
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 3.0e-51 205.7 180 78.3
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 1.1e-50 203.8 176 80.1
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 1.1e-50 203.8 174 81.0
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 1.5e-50 203.4 179 78.8
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.5e-50 203.4 179 79.3
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 1.9e-50 203.0 174 81.0
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 2.5e-50 202.6 174 79.3
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 2.5e-50 202.6 173 81.5
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 3.3e-50 202.2 174 77.6
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 4.3e-50 201.8 176 78.4
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 4.3e-50 201.8 177 74.6
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 7.4e-50 201.1 174 80.5
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 9.6e-50 200.7 175 80.6
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 1.6e-49 199.9 176 79.5
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 2.1e-49 199.5 179 78.8
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 2.1e-49 199.5 175 79.4
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 2.8e-49 199.1 176 79.5
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 4.8e-49 198.4 175 79.4
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 6.2e-49 198.0 174 59.2
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 6.2e-49 198.0 200 52.0
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 8.1e-49 197.6 174 79.9
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 1.8e-48 196.4 175 79.4
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 1.8e-48 196.4 176 58.5
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 6.9e-48 194.5 176 58.0
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 6.9e-48 194.5 176 58.0
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 1.2e-47 193.7 174 77.6
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 2.0e-47 193.0 177 76.3
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 2.0e-47 193.0 174 79.3
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 3.4e-47 192.2 175 77.7
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 7.6e-47 191.0 176 77.3
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 6.4e-46 188.0 155 85.8
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 6.4e-46 188.0 250 44.0
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 8.4e-46 187.6 177 75.1
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 1.1e-45 187.2 175 73.7
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 4.2e-45 185.3 174 76.4
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 1.2e-44 183.7 174 75.3
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 2.7e-44 182.6 175 76.6
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 1.8e-43 179.9 176 72.7
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 3.9e-43 178.7 204 63.7
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 5.1e-43 178.3 179 53.1
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 2.5e-42 176.0 179 51.4
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 2.5e-42 176.0 192 48.4
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 2.8e-41 172.6 173 72.3
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 2.6e-39 166.0 195 67.2
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 7.6e-39 164.5 173 50.9
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 2.2e-38 162.9 176 71.0
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 2.2e-38 162.9 174 44.8
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 6.5e-38 161.4 175 48.6
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 6.5e-38 161.4 151 51.0
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 1.9e-37 159.8 145 80.7
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 4.2e-37 158.7 173 50.9
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 9.3e-37 157.5 138 82.6
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 9.3e-37 157.5 178 48.9
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 2.1e-36 156.4 139 84.2
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 4.6e-36 155.2 88 84.1
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 1.8e-35 153.3 138 71.7
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 8.7e-35 151.0 172 45.3
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.9e-34 149.8 140 82.1
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 5.7e-34 148.3 84 81.0
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 2.8e-33 146.0 179 64.2
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 4.8e-33 145.2 217 45.6
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.5e-31 140.2 166 69.3
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 3.4e-31 139.0 167 68.9
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 4.5e-31 138.7 89 75.3
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 5.9e-31 138.3 166 68.7
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 6.5e-30 134.8 126 73.8
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.1e-29 134.0 89 71.9
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 5.7e-26 121.7 88 62.5
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 2.2e-25 119.8 119 52.1
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 3.4e-23 112.5 122 49.2
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 5.5e-21 105.1 165 39.4
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 1.2e-20 104.0 116 45.7
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 1.2e-15 87.4 114 38.6
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 9.4e-13 77.8 101 41.6
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 5.2e-11 72.0 49 67.3
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 2.4e-08 63.2 35 80.0
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.6e-07 59.7 45 66.7
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 4.5e-07 58.9 34 79.4
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 5.0e-06 55.5 34 70.6


User provided reference genes

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