Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0388221 Lupinus albus HOM05D005612 ORTHO05D007014 5.8e-52 207.2 100 100.0
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 3.8e-11 71.6 35 91.4
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 7.9e-09 63.9 35 82.9
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 1.0e-08 63.5 35 80.0
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 1.8e-08 62.8 35 80.0
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 1.8e-08 62.8 35 80.0
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 2.3e-08 62.4 35 77.1
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 2.3e-08 62.4 35 77.1
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 3.9e-08 61.6 35 77.1
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 8.7e-08 60.5 35 77.1
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 8.7e-08 60.5 35 77.1
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 1.5e-07 59.7 34 76.5
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 1.5e-07 59.7 34 76.5
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 1.5e-07 59.7 35 77.1
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 1.5e-07 59.7 34 73.5
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 1.9e-07 59.3 34 79.4
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 1.9e-07 59.3 34 79.4
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 1.9e-07 59.3 35 74.3
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 1.9e-07 59.3 35 68.6
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 2.5e-07 58.9 34 76.5
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 2.5e-07 58.9 34 76.5
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 2.5e-07 58.9 34 76.5
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 3.3e-07 58.5 34 79.4
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 3.3e-07 58.5 35 68.6
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 3.3e-07 58.5 34 73.5
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 3.3e-07 58.5 35 71.4
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 3.3e-07 58.5 35 71.4
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 4.3e-07 58.2 35 65.7
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 4.3e-07 58.2 35 65.7
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 4.3e-07 58.2 35 65.7
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 4.3e-07 58.2 35 65.7
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 4.3e-07 58.2 35 65.7
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 4.3e-07 58.2 35 68.6
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 4.3e-07 58.2 35 68.6
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 4.3e-07 58.2 34 76.5
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 4.3e-07 58.2 35 65.7
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 4.3e-07 58.2 35 65.7
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 5.7e-07 57.8 35 68.6
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 5.7e-07 57.8 34 73.5
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 5.7e-07 57.8 34 76.5
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 5.7e-07 57.8 35 71.4
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 7.4e-07 57.4 36 63.9
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 7.4e-07 57.4 34 73.5
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 7.4e-07 57.4 34 73.5
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 7.4e-07 57.4 34 73.5
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 7.4e-07 57.4 34 73.5
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 7.4e-07 57.4 34 70.6
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 7.4e-07 57.4 34 70.6
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 7.4e-07 57.4 34 70.6
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 7.4e-07 57.4 34 70.6
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 7.4e-07 57.4 34 70.6
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 7.4e-07 57.4 34 70.6
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 7.4e-07 57.4 34 70.6
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 7.4e-07 57.4 34 73.5
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 9.6e-07 57.0 34 70.6
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 9.6e-07 57.0 34 73.5
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 1.3e-06 56.6 34 73.5
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 1.3e-06 56.6 34 67.6
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 1.3e-06 56.6 34 73.5
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 1.6e-06 56.2 35 62.9
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 1.6e-06 56.2 35 62.9
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 1.6e-06 56.2 35 62.9
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.6e-06 56.2 34 70.6
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.6e-06 56.2 34 70.6
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 2.1e-06 55.8 34 70.6
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 2.1e-06 55.8 34 67.6
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 2.1e-06 55.8 34 73.5
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 2.1e-06 55.8 34 73.5
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 2.1e-06 55.8 34 73.5
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 2.8e-06 55.5 34 70.6
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 3.7e-06 55.1 35 62.9
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 3.7e-06 55.1 34 67.6
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 4.8e-06 54.7 35 74.3
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 4.8e-06 54.7 35 74.3
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 4.8e-06 54.7 35 74.3
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 6.2e-06 54.3 35 74.3
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 6.2e-06 54.3 34 70.6


User provided reference genes

Program Settings