Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 1.3e-132 476.5 251 100.0
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 1.3e-100 370.2 249 76.7
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 2.2e-100 369.4 251 78.1
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 8.4e-100 367.5 249 76.3
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 5.4e-99 364.8 251 77.7
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 1.6e-98 363.2 242 81.0
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 2.3e-97 359.4 239 79.9
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 8.7e-97 357.5 242 79.3
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 1.1e-96 357.1 245 78.4
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 2.8e-95 352.4 253 77.1
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 1.5e-93 346.7 209 86.6
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 1.5e-93 346.7 242 78.5
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 1.5e-85 320.1 208 80.3
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 1.7e-84 316.6 241 73.9
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 5.4e-83 311.6 242 72.3
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 7.1e-83 311.2 240 72.5
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 1.2e-82 310.5 243 70.4
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 2.1e-82 309.7 234 71.8
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 2.7e-82 309.3 239 73.2
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 1.3e-81 307.0 240 72.9
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.1e-80 303.9 235 72.3
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 1.5e-80 303.5 253 66.8
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 2.5e-80 302.8 236 70.3
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 3.3e-80 302.4 239 70.7
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 5.6e-80 301.6 253 68.4
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 7.4e-80 301.2 204 78.4
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 2.1e-79 299.7 241 70.1
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 4.8e-79 298.5 242 69.8
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 6.2e-79 298.1 239 69.9
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 8.1e-79 297.7 236 68.6
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.8e-78 296.6 242 69.0
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.8e-78 296.6 238 71.4
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 3.1e-78 295.8 242 69.4
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 4.0e-78 295.4 247 66.4
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 4.0e-78 295.4 243 69.5
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 5.3e-78 295.0 242 70.2
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 5.3e-78 295.0 242 70.2
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 9.0e-78 294.3 239 68.2
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 3.4e-77 292.4 248 66.5
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 5.8e-77 291.6 246 65.0
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 1.0e-76 290.8 242 67.4
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.0e-76 290.8 235 69.8
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 1.0e-76 290.8 237 69.2
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 1.7e-76 290.0 239 69.9
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 2.2e-76 289.7 249 64.7
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 2.2e-76 289.7 242 68.6
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.2e-76 289.7 242 68.6
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 3.8e-76 288.9 248 66.1
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.8e-76 288.9 242 68.2
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.8e-76 288.9 235 69.4
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 4.9e-76 288.5 241 69.3
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.9e-76 288.5 235 69.4
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 6.5e-76 288.1 237 67.1
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 1.4e-75 287.0 244 68.4
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 1.9e-75 286.6 198 76.8
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 2.5e-75 286.2 242 66.5
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 4.2e-75 285.4 235 68.9
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 7.1e-75 284.6 247 68.0
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 7.1e-75 284.6 247 68.0
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 4.6e-74 282.0 244 66.8
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 6.0e-74 281.6 238 66.8
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 7.9e-74 281.2 243 67.5
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 7.9e-74 281.2 244 67.6
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 7.9e-74 281.2 249 67.1
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 1.0e-73 280.8 244 67.6
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 1.0e-73 280.8 242 64.0
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 1.1e-72 277.3 234 65.8
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 1.1e-72 277.3 207 72.9
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 1.1e-72 277.3 238 67.6
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 2.5e-72 276.2 252 65.1
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 1.3e-71 273.9 211 69.7
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 4.8e-71 271.9 201 73.6
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 6.2e-71 271.6 242 62.8
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 8.2e-71 271.2 264 59.5
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.4e-70 270.4 196 76.0
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 3.1e-70 269.2 232 65.5
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 4.1e-70 268.9 237 62.4
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 6.9e-70 268.1 234 65.4
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 9.0e-70 267.7 243 63.4
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 1.2e-69 267.3 244 63.1
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.5e-69 266.9 238 63.0
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.5e-69 265.4 221 67.0
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 7.6e-69 264.6 261 60.2
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.0e-68 264.2 216 67.6
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 1.3e-68 263.8 206 70.4
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 1.7e-68 263.5 207 73.4
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 2.9e-68 262.7 206 69.9
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 5.0e-68 261.9 221 66.1
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 6.5e-68 261.5 241 61.0
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 1.1e-67 260.8 240 62.5
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.4e-67 260.4 210 68.1
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.4e-67 260.4 191 73.8
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 4.2e-67 258.8 243 64.2
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 7.2e-67 258.1 259 61.8
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.2e-66 257.3 233 63.1
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.7e-66 256.1 240 64.6
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.8e-65 253.4 242 62.0
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 1.8e-65 253.4 237 65.4
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 1.1e-64 250.8 235 61.7
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.5e-64 250.4 240 61.2
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 2.5e-64 249.6 240 63.3
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 4.8e-63 245.4 220 62.3
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.8e-62 243.4 257 59.1
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 3.1e-62 242.7 239 58.2
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 2.0e-61 240.0 198 67.7
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 5.9e-61 238.4 229 60.7
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 7.7e-61 238.0 254 56.3
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 5.0e-60 235.3 211 63.5
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 1.1e-59 234.2 262 58.0
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 1.9e-59 233.4 262 55.3
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.9e-59 233.4 240 54.6
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 1.9e-59 233.4 211 63.0
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 4.2e-59 232.3 262 55.7
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 7.2e-59 231.5 228 56.6
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 9.4e-59 231.1 237 54.9
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.2e-58 230.7 229 56.3
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.0e-57 227.6 240 56.2
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.8e-57 226.9 230 59.1
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 3.0e-57 226.1 172 72.1
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 3.9e-57 225.7 233 58.4
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 1.5e-56 223.8 172 71.5
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 2.5e-56 223.0 172 70.9
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 2.5e-56 223.0 172 70.9
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 3.3e-56 222.6 203 63.5
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 3.3e-56 222.6 234 54.7
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 7.4e-56 221.5 230 55.7
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 1.8e-54 216.9 242 55.8
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 2.6e-53 213.0 144 77.8
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.4e-51 207.2 200 60.0
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 8.8e-49 198.0 235 51.1
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.0e-45 186.8 192 57.3
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 4.5e-45 185.7 235 48.9
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 7.7e-45 184.9 126 77.0
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 1.3e-44 184.1 197 57.9
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 2.9e-44 183.0 173 63.0
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 5.5e-43 178.7 188 53.2
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 4.0e-41 172.6 115 80.9
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 7.5e-40 168.3 227 48.0
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 1.1e-38 164.5 166 54.2
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 7.0e-38 161.8 189 51.3
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 7.7e-37 158.3 231 45.5
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 1.2e-34 151.0 231 43.7
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 3.6e-34 149.4 100 80.0
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.0e-33 147.9 194 46.9
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 4.0e-33 146.0 185 51.4
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 8.3e-31 138.3 208 44.2
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.4e-30 137.5 93 78.5
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 7.0e-30 135.2 196 42.9
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 3.5e-29 132.9 117 62.4
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 4.0e-25 119.4 102 64.7
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 8.8e-25 118.2 98 66.3
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.4e-22 110.9 97 59.8
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 4.1e-22 109.4 133 51.1
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 3.4e-16 89.7 91 52.7
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.2e-14 83.2 149 42.3
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 1.0e-12 78.2 103 49.5
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 2.2e-07 60.5 63 57.1
CBR_g37640 Chara braunii HOM05D004453 ORTHO05D005375 1.1e-06 58.2 116 30.2
BcaC04g20719 Brassica carinata HOM05D004453 ORTHO05D014925 1.4e-06 57.8 89 46.1
HPP92_019024 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.2e-06 56.6 101 40.6


User provided reference genes

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