Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2734.9 1391 100.0
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2538.8 1391 91.2
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2522.3 1391 90.8
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2508.0 1391 90.2
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2504.2 1392 90.2
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2504.2 1391 90.3
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2493.8 1393 89.9
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2492.2 1391 89.8
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2478.7 1482 85.2
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2423.7 1485 83.4
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2340.5 1391 83.5
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2333.5 1391 83.8
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2326.6 1391 83.5
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2314.7 1391 82.8
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2314.7 1392 82.8
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2312.7 1391 83.3
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2311.2 1390 82.9
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2307.7 1392 82.8
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2296.2 1392 82.4
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2294.2 1391 82.3
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2291.2 1393 82.0
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2290.8 1391 82.2
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2287.3 1379 82.3
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2285.0 1393 81.8
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2278.1 1392 81.6
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2277.7 1391 81.8
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2277.7 1397 81.1
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2275.7 1393 81.6
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2273.8 1391 81.0
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2269.2 1391 81.6
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2268.8 1391 82.0
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2266.9 1393 81.0
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2236.1 1391 79.5
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2236.1 1391 79.1
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2236.1 1391 79.7
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2235.7 1403 79.8
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2230.7 1391 79.6
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2227.2 1391 79.4
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2224.5 1436 78.9
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2223.7 1407 80.2
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2219.5 1348 81.9
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2213.0 1392 79.2
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2212.2 1391 78.9
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2203.7 1391 79.0
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2200.2 1393 79.3
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2191.8 1392 77.7
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2191.4 1395 78.5
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2190.2 1392 78.6
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2189.5 1392 77.7
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2178.7 1428 77.2
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2173.3 1391 78.0
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2168.7 1400 77.2
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2167.5 1374 77.9
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2161.3 1391 77.1
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2161.0 1392 77.9
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2159.0 1392 77.6
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2157.9 1374 78.2
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2153.6 1391 76.6
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2153.6 1403 76.5
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2147.9 1405 76.8
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2145.5 1406 76.7
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2141.3 1405 76.3
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2139.0 1404 76.4
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2137.8 1405 76.6
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2136.3 1405 76.7
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2134.8 1405 76.2
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2134.8 1405 76.2
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2133.6 1398 75.5
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2127.4 1422 75.7
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2127.1 1381 76.2
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2112.4 1415 75.7
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2106.6 1369 77.0
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2102.0 1392 74.9
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2097.8 1255 83.0
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2045.8 1420 74.3
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2030.4 1225 81.8
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 1995.3 1702 63.2
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1986.1 1354 73.4
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1980.3 1348 73.3
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1979.5 1352 73.7
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 1970.3 1305 75.9
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1923.7 1334 71.9
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1917.1 1190 79.3
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1912.1 1400 69.8
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1900.2 1377 68.9
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1890.9 1379 70.6
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1847.8 1371 67.4
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1844.3 1388 66.8
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1742.2 1532 60.3
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1482.2 1157 64.2
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1442.6 932 76.0
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1409.0 1378 52.5
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1390.2 823 83.5
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1361.7 979 71.5
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1356.7 1351 51.2
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1354.7 761 89.4
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1349.0 1372 50.3
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1327.8 1347 51.2
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1216.4 716 84.5
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1186.4 816 72.9
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1172.5 883 65.5
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1116.3 793 71.9
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1078.5 588 90.6
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 2.3e-276 956.4 819 57.3
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 6.0e-248 862.1 603 72.8
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 8.2e-213 745.3 516 73.1
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 8.2e-205 718.8 470 76.2
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 8.8e-199 698.7 537 65.7
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 4.2e-185 653.3 1485 29.7
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 4.6e-155 553.5 521 58.0
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.3e-146 525.4 368 71.7
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 3.4e-142 510.8 536 57.8
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 4.7e-136 490.3 530 50.2
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 3.2e-116 424.5 269 79.9
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 4.8e-104 384.0 215 87.4
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 1.5e-102 379.0 416 54.6
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.1e-87 329.7 222 73.4
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 6.8e-66 257.3 299 47.5
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 4.5e-62 244.6 145 77.9
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 2.9e-61 241.9 133 90.2
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.3e-45 189.1 128 68.0
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 3.6e-35 155.2 116 69.8
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 2.6e-33 149.1 89 74.2
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 7.5e-33 147.5 162 48.8
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.3e-32 146.7 134 61.2
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 6.4e-32 144.4 112 67.9
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 7.1e-31 141.0 84 82.1
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 9.2e-31 140.6 94 73.4
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 2.7e-30 139.0 83 79.5
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 2.5e-28 132.5 98 70.4
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 1.6e-27 129.8 117 53.0
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 5.2e-26 124.8 210 42.9
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 3.2e-23 115.5 165 40.6
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 4.1e-23 115.2 86 66.3
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 1.6e-22 113.2 239 35.1
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 4.6e-22 111.7 119 54.6
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 4.6e-22 111.7 98 54.1
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 6.6e-21 107.8 87 59.8
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 8.1e-19 100.9 124 46.0
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 2.2e-16 92.8 51 86.3
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 6.4e-16 91.3 100 52.0
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 3.5e-14 85.5 50 88.0
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 3.5e-14 85.5 101 43.6
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 4.6e-14 85.1 50 80.0
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 4.6e-14 85.1 50 80.0
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 8.7e-13 80.9 53 79.2
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 2.5e-12 79.3 63 68.3
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 6.2e-11 74.7 42 88.1
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 4.9e-08 65.1 35 91.4
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 4.9e-08 65.1 35 91.4
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 4.9e-08 65.1 35 91.4
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 4.9e-08 65.1 35 91.4
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 4.9e-08 65.1 35 91.4
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 7.1e-07 61.2 34 88.2
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 9.3e-07 60.8 54 55.6


User provided reference genes

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