Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 3.6e-97 358.2 177 100.0
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 8.9e-80 300.4 175 82.3
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 8.3e-78 293.9 175 80.6
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 4.3e-74 281.6 175 77.7
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 2.8e-73 278.9 175 75.4
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 8.0e-73 277.3 169 78.7
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 1.2e-71 273.5 174 74.7
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.0e-71 272.7 175 77.1
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 4.4e-71 271.6 174 75.3
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 9.8e-71 270.4 173 74.6
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.3e-70 270.0 173 74.6
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.9e-69 266.2 162 77.2
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.9e-69 266.2 162 77.2
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.2e-69 265.4 165 73.9
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.2e-68 263.5 171 74.9
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.6e-68 263.1 165 75.2
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 4.6e-68 261.5 170 74.1
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 4.6e-68 261.5 165 74.5
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 6.0e-68 261.2 170 72.9
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.3e-67 260.0 170 72.9
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.3e-67 260.0 170 72.9
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.7e-67 259.6 160 75.6
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.7e-67 259.6 169 74.0
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 3.9e-67 258.5 170 72.9
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 8.6e-67 257.3 174 71.3
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 8.6e-67 257.3 160 76.2
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 1.1e-66 256.9 165 72.7
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.5e-66 256.5 170 72.4
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 1.9e-66 256.1 165 72.1
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.9e-66 256.1 170 71.2
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 2.5e-66 255.8 170 70.6
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 3.3e-66 255.4 174 70.1
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 3.3e-66 255.4 165 72.1
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 3.3e-66 255.4 172 70.3
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.3e-66 255.4 159 75.5
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 5.6e-66 254.6 160 73.8
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 5.6e-66 254.6 165 72.7
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 7.3e-66 254.2 172 72.1
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 7.3e-66 254.2 158 76.6
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 7.3e-66 254.2 162 73.5
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.2e-65 253.4 170 71.2
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.6e-65 253.1 161 73.9
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.6e-65 253.1 171 70.8
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 1.6e-65 253.1 165 73.3
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 2.1e-65 252.7 162 73.5
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.1e-65 252.7 170 70.0
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 2.1e-65 252.7 168 73.2
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.1e-65 252.7 162 72.8
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 2.8e-65 252.3 162 72.2
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 3.6e-65 251.9 168 70.2
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 3.6e-65 251.9 170 70.6
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.6e-65 251.9 170 71.2
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 4.7e-65 251.5 166 72.3
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 4.7e-65 251.5 171 70.8
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 1.1e-64 250.4 163 70.6
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.1e-64 250.4 171 70.2
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.4e-64 250.0 170 70.6
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 1.4e-64 250.0 168 69.6
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.8e-64 249.6 162 71.6
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.8e-64 249.6 161 72.7
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 1.8e-64 249.6 175 69.1
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.3e-64 249.2 171 70.2
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.3e-64 249.2 171 70.2
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 2.3e-64 249.2 168 70.2
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 2.3e-64 249.2 167 71.9
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 4.0e-64 248.4 165 70.9
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 5.2e-64 248.1 170 68.8
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 5.2e-64 248.1 154 76.6
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 6.8e-64 247.7 171 70.2
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 8.9e-64 247.3 161 71.4
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 8.9e-64 247.3 161 71.4
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 1.2e-63 246.9 161 71.4
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 1.2e-63 246.9 161 71.4
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.2e-63 246.9 171 70.2
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 1.2e-63 246.9 171 70.2
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 1.5e-63 246.5 172 68.6
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.5e-63 246.5 172 68.6
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 2.0e-63 246.1 168 69.6
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 2.6e-63 245.7 165 70.3
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 2.6e-63 245.7 165 69.1
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 3.4e-63 245.4 168 69.6
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 7.5e-63 244.2 171 68.4
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 9.8e-63 243.8 168 68.5
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.3e-62 243.4 169 68.0
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 1.7e-62 243.0 174 67.8
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.7e-62 243.0 171 69.0
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 2.9e-62 242.3 170 65.9
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 3.7e-62 241.9 168 69.6
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 3.7e-62 241.9 168 69.0
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 4.9e-62 241.5 171 67.3
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 6.4e-62 241.1 172 69.2
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.9e-61 239.6 161 72.0
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.4e-61 239.2 170 65.3
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.2e-61 238.8 164 68.3
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.1e-61 238.4 169 68.0
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 5.4e-61 238.0 164 69.5
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.4e-61 238.0 169 67.5
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 1.6e-60 236.5 170 67.6
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 3.5e-60 235.3 175 65.7
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 4.6e-60 235.0 173 67.1
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 1.0e-59 233.8 167 67.7
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 2.3e-59 232.6 167 68.3
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 2.3e-59 232.6 167 68.3
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.1e-59 231.5 174 66.1
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 6.6e-59 231.1 173 65.3
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 8.6e-59 230.7 160 69.4
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.5e-58 229.9 164 66.5
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 7.3e-58 227.6 170 64.7
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 9.5e-58 227.3 169 65.1
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 9.5e-58 227.3 158 64.6
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 9.5e-58 227.3 160 66.2
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.2e-57 226.9 167 65.9
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.6e-57 226.5 166 66.9
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.8e-57 225.7 167 64.7
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 8.1e-57 224.2 163 65.6
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.4e-56 223.4 163 67.5
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 2.3e-56 222.6 163 63.8
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 6.8e-56 221.1 165 64.2
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 8.9e-56 220.7 171 62.0
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 1.5e-55 219.9 176 62.5
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 1.5e-55 219.9 166 63.9
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 2.6e-55 219.2 167 65.9
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 3.4e-55 218.8 164 62.2
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.9e-54 215.7 170 60.6
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.7e-54 215.3 162 63.0
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.7e-54 215.3 162 64.8
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 9.2e-53 210.7 163 62.6
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 3.5e-52 208.8 131 72.5
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.0e-51 207.2 129 73.6
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 2.3e-51 206.1 167 59.3
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 3.9e-51 205.3 163 60.1
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 9.6e-50 200.7 171 58.5
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 2.8e-49 199.1 155 60.6
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.1e-48 195.7 159 61.6
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 5.2e-48 194.9 163 57.1
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 5.2e-48 194.9 162 61.7
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 8.9e-48 194.1 157 56.7
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.2e-47 193.7 174 56.3
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 2.6e-47 192.6 159 61.0
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.6e-47 192.6 159 61.0
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.4e-47 192.2 156 59.0
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.9e-47 190.7 159 60.4
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.8e-46 188.7 140 65.0
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 4.9e-46 188.3 139 69.8
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 8.4e-46 187.6 171 56.1
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 1.4e-45 186.8 158 55.1
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 3.2e-45 185.7 164 57.3
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.3e-45 184.1 173 56.6
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.7e-43 179.9 160 58.1
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.0e-43 179.1 157 52.9
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.1e-42 177.2 165 55.8
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 4.3e-42 175.3 159 59.1
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 4.8e-41 171.8 168 54.2
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 6.2e-41 171.4 161 54.0
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 6.2e-41 171.4 126 65.9
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 6.9e-40 167.9 118 69.5
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 9.0e-40 167.5 176 52.3
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 9.0e-40 167.5 168 53.0
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 4.4e-39 165.2 129 62.8
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 4.4e-39 165.2 142 59.2
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 5.8e-39 164.9 142 52.1
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.9e-38 162.5 125 61.6
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 9.3e-37 157.5 95 77.9
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.6e-34 148.3 112 67.0
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 5.4e-29 131.7 89 69.7
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.2e-28 130.6 162 41.4
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.6e-28 130.2 90 65.6
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.7e-28 129.4 93 64.5
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.5e-28 129.0 104 59.6
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 4.6e-28 128.6 169 43.8
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 1.6e-20 103.6 73 61.6
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 9.0e-16 87.8 83 54.2
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 2.1e-12 76.6 81 54.3
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 3.0e-11 72.8 51 62.7
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 1.1e-10 70.9 184 28.8
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.2e-09 66.6 106 38.7
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 1.1e-08 64.3 33 84.8
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.1e-08 64.3 53 58.5
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 4.1e-08 62.4 172 30.2
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 5.3e-08 62.0 77 35.1
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.6e-07 59.7 33 75.8
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 3.8e-06 55.8 32 75.0


User provided reference genes

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