Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 8.4e-148 527.3 333 100.0
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 8.8e-105 384.4 333 74.8
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 1.5e-104 383.6 332 80.7
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 2.0e-101 373.2 335 74.0
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 2.2e-100 369.8 341 76.0
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 6.3e-95 351.7 331 75.2
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 8.2e-95 351.3 334 68.6
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 5.9e-93 345.1 331 72.5
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 2.2e-92 343.2 333 69.4
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 7.2e-91 338.2 417 62.4
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 6.1e-90 335.1 335 71.9
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 2.3e-89 333.2 340 69.7
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 1.3e-87 327.4 331 69.8
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 1.4e-86 323.9 347 68.3
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 1.4e-86 323.9 347 68.3
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 1.4e-86 323.9 335 70.7
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 4.1e-86 322.4 332 71.4
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 7.0e-86 321.6 333 68.8
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.2e-85 320.9 333 69.1
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 2.7e-85 319.7 330 70.6
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 7.7e-85 318.2 333 68.2
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 1.0e-84 317.8 333 67.9
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 1.1e-83 314.3 334 68.3
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 3.2e-83 312.8 333 67.6
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 7.2e-83 311.6 351 65.8
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 3.6e-82 309.3 339 66.4
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 6.1e-82 308.5 338 65.7
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.1e-82 308.5 312 71.8
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.0e-81 307.8 344 67.2
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.3e-81 306.6 296 73.6
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 4.0e-81 305.8 342 66.7
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 5.2e-81 305.4 355 64.5
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 5.2e-81 305.4 348 64.9
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 8.8e-81 304.7 338 66.9
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 8.8e-81 304.7 342 67.5
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 1.5e-80 303.9 341 67.7
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.5e-80 303.9 348 65.5
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 4.4e-80 302.4 297 73.7
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 2.2e-79 300.1 333 67.0
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.7e-79 299.3 339 65.8
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 6.3e-79 298.5 363 63.4
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 6.3e-79 298.5 333 67.6
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 8.3e-79 298.1 333 66.7
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 1.1e-78 297.7 332 66.0
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 1.8e-78 297.0 294 72.8
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 2.4e-78 296.6 343 63.3
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 3.1e-78 296.2 345 64.9
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 3.1e-78 296.2 352 56.5
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 3.1e-78 296.2 374 60.2
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 5.4e-78 295.4 335 65.4
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 5.4e-78 295.4 340 64.7
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 5.4e-78 295.4 344 63.7
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 7.0e-78 295.0 336 65.5
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.3e-76 290.0 343 64.4
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 3.8e-76 289.3 343 63.3
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 3.8e-76 289.3 344 64.5
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 1.1e-75 287.7 343 64.1
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.1e-75 287.7 278 72.7
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 1.1e-75 287.7 337 63.5
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 1.5e-75 287.3 340 63.8
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 1.9e-75 287.0 345 62.3
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 2.5e-75 286.6 344 61.3
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 1.2e-74 284.3 353 62.0
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 1.2e-74 284.3 343 62.1
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.8e-74 283.1 281 72.2
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 2.8e-74 283.1 336 63.7
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 4.7e-74 282.3 390 45.4
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 4.7e-74 282.3 334 62.3
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 8.0e-74 281.6 329 65.7
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 1.0e-73 281.2 350 62.6
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.4e-73 280.8 283 70.0
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.8e-73 280.4 355 60.3
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.8e-73 280.4 339 64.6
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 3.0e-73 279.6 345 61.4
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 4.0e-73 279.3 300 69.3
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 8.9e-73 278.1 283 68.9
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 8.9e-73 278.1 338 59.5
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 1.2e-72 277.7 312 65.1
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 2.0e-72 276.9 337 61.4
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 2.0e-72 276.9 355 60.0
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 3.4e-72 276.2 332 63.9
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 5.7e-72 275.4 326 64.4
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.7e-71 273.9 345 62.0
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 4.9e-71 272.3 346 59.2
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.4e-70 270.8 348 60.6
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 1.6e-69 267.3 308 64.3
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.3e-67 259.6 339 61.7
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 1.2e-66 257.7 291 57.7
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 2.1e-66 256.9 343 60.3
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 2.3e-65 253.4 345 55.7
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 5.8e-64 248.8 215 60.0
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 2.2e-63 246.9 217 61.8
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 8.3e-63 245.0 333 59.8
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 1.4e-62 244.2 235 57.4
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 4.1e-62 242.7 297 64.6
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 5.4e-62 242.3 334 58.7
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.9e-59 233.8 332 57.8
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.9e-59 233.8 179 64.8
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 2.5e-59 233.4 346 56.1
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 5.6e-59 232.3 284 62.3
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 2.8e-58 229.9 295 63.1
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.8e-57 225.3 335 56.7
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.8e-57 225.3 361 38.8
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 8.9e-57 224.9 302 61.3
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 8.9e-57 224.9 163 68.1
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 3.4e-56 223.0 336 57.7
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.3e-55 221.1 209 56.9
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.4e-54 217.6 240 70.0
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 5.4e-54 215.7 177 66.1
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 9.2e-54 214.9 170 62.9
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.0e-53 212.2 334 55.1
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 1.7e-52 210.7 320 40.9
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 2.2e-47 193.7 291 58.4
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 3.1e-41 173.3 241 63.9
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 2.6e-40 170.2 191 75.9
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 3.4e-40 169.9 264 58.7
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 1.1e-38 164.9 165 54.5
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 7.1e-38 162.2 191 72.8
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 8.7e-36 155.2 169 51.5
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 6.2e-34 149.1 214 39.7
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 6.9e-33 145.6 278 51.8
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 1.2e-32 144.8 287 50.5
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 9.3e-30 135.2 84 72.6
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.0e-28 131.7 177 43.5
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.7e-28 128.6 176 43.2
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 1.5e-27 127.9 125 52.0
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 9.6e-27 125.2 176 42.0
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 2.1e-26 124.0 172 72.7
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.9e-23 112.8 142 81.0
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.2e-21 108.2 112 49.1
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 3.5e-21 106.7 65 78.5
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.1e-17 95.1 128 81.2
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 1.1e-14 85.1 134 59.0
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 2.5e-14 84.0 154 39.0
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 7.1e-14 82.4 122 82.0
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.5e-11 74.7 81 48.1
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 1.0e-07 62.0 37 75.7
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.7e-07 61.2 54 50.0
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.8e-07 60.1 41 58.5
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 6.5e-07 59.3 48 64.6
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 1.1e-06 58.5 58 46.6


User provided reference genes

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