Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 0.0e+00 1075.1 587 100.0
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 1.3e-180 637.1 671 57.1
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 1.3e-180 637.1 671 57.1
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 1.9e-174 616.7 608 56.1
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 6.6e-172 608.2 630 54.9
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 1.6e-170 603.6 612 55.2
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 3.7e-167 592.4 613 55.0
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 1.1e-166 590.9 635 55.1
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 2.4e-166 589.7 624 52.7
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 5.4e-166 588.6 609 53.5
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 1.2e-165 587.4 614 55.4
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 2.7e-165 586.3 609 54.0
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 1.0e-164 584.3 609 53.4
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 3.9e-164 582.4 618 53.4
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 5.1e-164 582.0 598 60.5
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 5.6e-163 578.6 630 53.3
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.1e-162 576.6 614 55.9
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 2.8e-162 576.2 599 58.8
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.8e-161 573.5 610 54.4
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 2.0e-160 570.1 629 57.6
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 9.9e-160 567.8 610 54.1
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.9e-159 566.2 610 54.1
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 4.9e-159 565.5 618 52.3
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 9.2e-158 561.2 597 59.0
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.0e-156 557.8 620 52.3
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 2.3e-156 556.6 599 57.4
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 3.0e-156 556.2 606 51.2
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 1.5e-155 553.9 604 53.0
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 2.5e-155 553.1 596 55.0
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 4.3e-155 552.4 612 52.6
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 4.7e-154 548.9 649 50.7
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 4.7e-154 548.9 610 51.6
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 8.1e-154 548.1 613 51.7
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 1.8e-153 547.0 613 52.4
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.8e-153 547.0 607 52.4
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 6.8e-153 545.0 603 52.9
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 5.8e-152 542.0 609 54.0
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 6.4e-151 538.5 620 51.6
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 1.4e-150 537.3 632 53.2
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 6.6e-148 528.5 571 53.8
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 6.6e-148 528.5 621 51.4
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 6.6e-148 528.5 640 50.0
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 1.1e-147 527.7 625 51.7
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 3.3e-147 526.2 626 48.7
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 6.2e-146 521.9 675 48.4
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.5e-144 517.3 575 53.9
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.4e-142 510.8 583 51.5
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 9.3e-142 508.1 620 51.5
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 9.3e-142 508.1 611 50.9
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 2.1e-141 506.9 562 56.4
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 6.0e-141 505.4 597 54.6
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 7.9e-141 505.0 607 52.6
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 7.9e-141 505.0 619 51.5
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 1.3e-140 504.2 612 50.0
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 1.7e-140 503.8 615 51.5
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 1.7e-140 503.8 601 48.9
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 1.7e-140 503.8 633 49.3
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 2.3e-140 503.4 607 52.4
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 6.6e-140 501.9 602 48.3
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 2.8e-138 496.5 608 47.0
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 2.4e-137 493.4 617 48.6
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.1e-137 493.0 709 44.6
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 1.5e-136 490.7 625 48.5
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 1.5e-136 490.7 623 49.3
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 2.6e-136 490.0 709 44.7
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 4.5e-136 489.2 621 50.4
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 2.2e-135 486.9 616 47.7
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 2.2e-135 486.9 508 54.5
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 1.8e-132 477.2 620 48.1
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 3.0e-132 476.5 623 48.0
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 5.1e-132 475.7 621 47.0
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 4.3e-131 472.6 623 48.6
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 4.3e-131 472.6 630 47.3
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 2.1e-130 470.3 480 53.3
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 2.1e-130 470.3 605 48.4
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 2.8e-130 469.9 616 46.4
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 4.8e-130 469.2 580 50.2
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 1.8e-129 467.2 632 45.6
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 1.8e-129 467.2 615 45.4
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 2.4e-129 466.8 618 48.2
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 3.1e-129 466.5 640 49.2
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 2.5e-126 456.8 617 45.4
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 2.1e-125 453.8 600 48.5
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 3.5e-125 453.0 613 48.0
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 3.5e-125 453.0 613 48.0
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 5.7e-123 445.7 607 47.9
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 4.1e-121 439.5 627 45.5
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 2.2e-119 433.7 608 46.7
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 2.9e-119 433.3 600 47.2
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 1.9e-118 430.6 628 46.2
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 3.2e-118 429.9 620 46.5
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 2.1e-117 427.2 626 45.5
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 2.1e-117 427.2 632 45.9
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 1.4e-113 414.5 594 44.6
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 1.3e-111 407.9 570 48.6
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 5.3e-105 386.0 419 55.1
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 2.9e-103 380.2 427 50.6
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 8.5e-95 352.1 611 41.4
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 1.9e-94 350.9 646 42.6
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 7.0e-89 332.4 406 48.0
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 3.6e-85 320.1 453 46.1
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 2.6e-83 313.9 574 37.6
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.2e-80 305.1 357 48.5
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 1.0e-76 292.0 499 38.9
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 7.7e-72 275.8 682 33.9
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 3.9e-63 246.9 294 48.0
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 3.1e-60 237.3 264 50.0
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 3.0e-55 220.7 237 53.2
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 3.2e-49 200.7 483 30.8
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 5.8e-43 179.9 279 37.3
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.4e-33 147.9 279 40.1
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 8.7e-31 139.4 175 49.1
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 2.1e-29 134.8 479 28.0
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.1e-29 134.8 154 48.7
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 2.1e-29 134.8 143 50.3
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 5.3e-28 130.2 154 50.6
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.7e-26 125.2 113 56.6
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 6.4e-26 123.2 566 23.5
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 1.1e-25 122.5 434 28.3
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 3.2e-25 120.9 98 63.3
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 7.9e-24 116.3 144 50.7
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 3.9e-23 114.0 177 46.9
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.9e-22 111.7 166 43.4
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.5e-22 111.3 135 52.6
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 5.6e-22 110.2 492 26.6
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.5e-19 102.1 81 63.0
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 5.8e-19 100.1 134 44.0
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 5.8e-19 100.1 184 42.4
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 5.5e-17 93.6 109 47.7
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 4.6e-16 90.5 147 42.2
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 3.1e-12 77.8 84 48.8
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 2.6e-11 74.7 150 39.3
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.6e-11 74.7 72 48.6
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.6e-11 74.7 95 51.6
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 7.6e-11 73.2 70 67.1
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 1.1e-09 69.3 67 49.3


User provided reference genes

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