Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 8.7e-100 367.1 199 100.0
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 1.9e-67 259.6 214 68.7
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 3.7e-58 228.8 224 62.5
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 8.2e-58 227.6 218 62.4
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 8.2e-58 227.6 216 63.4
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 9.1e-57 224.2 217 62.7
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 9.4e-54 214.2 214 57.9
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 8.8e-52 207.6 211 58.8
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.3e-51 205.7 211 56.9
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.3e-51 205.7 211 56.9
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 2.2e-50 203.0 220 55.9
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 2.2e-50 203.0 220 55.9
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 5.9e-48 194.9 211 59.7
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 2.8e-42 176.0 207 48.8
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 8.2e-42 174.5 223 48.0
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 3.1e-41 172.6 210 51.0
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 1.2e-40 170.6 227 44.9
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 2.2e-39 166.4 216 51.4
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 3.8e-39 165.6 231 45.0
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 1.1e-38 164.1 234 46.2
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 1.5e-38 163.7 206 49.5
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 2.5e-38 162.9 213 51.6
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 2.5e-38 162.9 234 47.4
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 3.2e-38 162.5 234 45.7
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 5.5e-38 161.8 212 44.8
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 7.2e-38 161.4 225 51.1
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 1.6e-37 160.2 219 51.1
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.6e-37 160.2 236 46.2
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 2.7e-37 159.5 219 50.7
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.7e-37 159.5 210 47.1
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 3.6e-37 159.1 213 45.5
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 8.0e-37 157.9 215 42.8
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 1.0e-36 157.5 216 44.9
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.3e-36 156.4 237 46.0
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.0e-36 156.0 208 46.6
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.0e-36 156.0 208 46.6
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.2e-35 154.1 203 47.8
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 2.0e-35 153.3 217 43.3
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 5.7e-35 151.8 211 46.4
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 9.8e-35 151.0 230 43.5
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 2.2e-34 149.8 210 42.9
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 4.8e-34 148.7 210 43.3
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 1.8e-33 146.7 210 42.9
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 3.1e-33 146.0 223 47.1
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.1e-33 145.6 220 43.2
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 4.1e-33 145.6 219 41.6
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 5.4e-33 145.2 212 48.6
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 5.4e-33 145.2 221 43.9
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.4e-33 145.2 212 42.9
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 7.0e-33 144.8 222 46.4
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 7.0e-33 144.8 199 47.7
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 9.1e-33 144.4 204 42.6
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 9.1e-33 144.4 221 43.9
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.2e-32 144.1 220 46.4
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.0e-32 143.3 218 41.3
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 2.0e-32 143.3 212 46.2
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.5e-32 142.5 210 41.0
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 4.5e-32 142.1 234 43.6
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.9e-32 141.7 216 46.8
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.9e-32 141.7 216 46.8
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 7.7e-32 141.4 231 45.5
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 1.3e-31 140.6 216 44.9
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 1.7e-31 140.2 220 44.5
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.2e-31 139.8 207 48.8
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 2.9e-31 139.4 194 49.0
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.8e-31 139.0 203 42.9
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 3.8e-31 139.0 235 43.0
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 5.0e-31 138.7 233 37.3
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 8.5e-31 137.9 216 41.7
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.1e-30 137.5 200 41.5
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.9e-30 136.7 204 41.2
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 2.5e-30 136.3 211 41.2
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 4.2e-30 135.6 213 46.0
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 5.5e-30 135.2 238 43.7
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 5.5e-30 135.2 209 44.0
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 7.2e-30 134.8 192 45.8
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 9.5e-30 134.4 213 46.0
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 9.5e-30 134.4 210 43.3
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.7e-29 132.1 204 41.2
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 4.7e-29 132.1 222 42.8
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 1.4e-28 130.6 208 46.2
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 1.8e-28 130.2 204 39.7
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 3.0e-28 129.4 200 40.0
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 2.0e-27 126.7 217 47.0
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 4.4e-27 125.6 185 48.6
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 5.7e-27 125.2 200 45.0
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 1.7e-26 123.6 218 39.9
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 2.2e-26 123.2 198 41.9
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 2.2e-26 123.2 251 41.8
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 2.8e-26 122.9 235 41.3
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 3.7e-26 122.5 196 43.4
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 9.2e-25 117.9 194 39.2
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 9.2e-25 117.9 214 38.8
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 1.2e-24 117.5 105 64.8
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 4.5e-24 115.5 217 36.4
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 4.5e-24 115.5 103 53.4
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 1.3e-23 114.0 200 37.5
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 2.9e-23 112.8 200 39.0
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 3.8e-23 112.5 215 34.4
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 4.3e-22 109.0 219 33.3
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 2.8e-21 106.3 224 42.0
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.7e-21 105.5 156 42.3
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 4.7e-21 105.5 199 35.2
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 1.4e-20 104.0 221 33.9
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 4.0e-20 102.4 195 36.4
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 8.9e-20 101.3 192 35.4
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 8.9e-20 101.3 192 35.4
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 8.9e-20 101.3 213 35.7
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 2.0e-19 100.1 206 35.0
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 3.4e-19 99.4 206 35.9
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 3.4e-19 99.4 206 35.9
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 3.4e-19 99.4 206 35.9
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 4.4e-19 99.0 202 41.1
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 4.4e-19 99.0 202 41.1
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 7.5e-19 98.2 214 32.7
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 9.8e-19 97.8 216 38.0
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 9.8e-19 97.8 206 34.0
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 9.8e-19 97.8 205 36.6
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.7e-18 97.1 192 34.4
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 2.2e-18 96.7 193 34.2
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 2.2e-18 96.7 193 34.2
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 2.9e-18 96.3 206 34.5
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 2.9e-18 96.3 206 34.5
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 6.4e-18 95.1 234 38.9
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.4e-17 94.0 218 32.1
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 3.2e-17 92.8 164 37.2
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 5.4e-17 92.0 136 39.0
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 1.6e-16 90.5 199 34.2
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 1.6e-16 90.5 105 46.7
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 5.9e-16 88.6 213 32.4
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 5.9e-16 88.6 99 47.5
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.0e-15 87.8 100 48.0
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.3e-15 87.4 193 29.0
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.3e-15 86.7 196 31.6
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 2.3e-15 86.7 99 48.5
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 3.9e-15 85.9 211 32.2
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 5.0e-15 85.5 215 32.1
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 8.6e-15 84.7 217 31.3
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.6e-13 80.5 187 34.8
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.1e-13 80.1 193 31.1
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 3.6e-13 79.3 183 30.6
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 3.1e-12 76.3 107 48.6
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 5.8e-11 72.0 186 33.3
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 1.7e-10 70.5 187 41.2
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 2.2e-10 70.1 195 31.3
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 4.9e-10 68.9 81 58.0
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 6.4e-10 68.6 91 40.7
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.4e-09 67.4 132 37.1
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 4.6e-08 62.4 124 37.9
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 1.7e-07 60.5 215 27.0
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 5.6e-06 55.5 130 29.2
Zm00001eb072350 Zea mays HOM05D004742 ORTHO05D005677 9.5e-06 54.7 81 51.9


User provided reference genes

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