Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 1.5e-56 222.6 116 100.0
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 1.1e-54 216.5 116 94.0
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 1.2e-53 213.0 116 91.4
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.6e-53 212.6 116 91.4
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 4.6e-53 211.1 116 90.5
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 6.1e-53 210.7 116 90.5
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 5.1e-52 207.6 113 92.0
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 4.3e-51 204.5 116 88.8
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 4.3e-51 204.5 116 88.8
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 4.3e-51 204.5 116 90.5
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 5.7e-51 204.1 116 87.9
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 5.7e-51 204.1 116 87.9
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 5.7e-51 204.1 116 88.8
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 5.7e-51 204.1 116 88.8
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 7.4e-51 203.8 116 87.9
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 7.4e-51 203.8 116 87.9
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 7.4e-51 203.8 116 87.9
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 9.7e-51 203.4 116 87.9
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 1.3e-50 203.0 116 87.1
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 1.3e-50 203.0 116 87.1
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 1.3e-50 203.0 116 87.1
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 2.2e-50 202.2 116 87.1
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 2.8e-50 201.8 116 87.1
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 4.8e-50 201.1 116 87.9
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 8.2e-50 200.3 116 86.2
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.1e-49 199.9 116 87.9
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 1.4e-49 199.5 110 88.2
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 1.4e-49 199.5 116 86.2
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 1.4e-49 199.5 116 86.2
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.8e-49 199.1 116 87.1
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 1.8e-49 199.1 113 87.6
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 2.4e-49 198.7 116 84.5
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 3.1e-49 198.4 113 88.5
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 3.1e-49 198.4 116 84.5
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 5.3e-49 197.6 116 86.2
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 5.3e-49 197.6 116 86.2
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 9.0e-49 196.8 116 84.5
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 9.0e-49 196.8 110 88.2
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 2.0e-48 195.7 115 87.0
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 2.0e-48 195.7 115 87.0
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 2.6e-48 195.3 116 84.5
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 4.5e-48 194.5 113 87.6
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 7.7e-48 193.7 117 85.5
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 7.7e-48 193.7 116 83.6
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 7.7e-48 193.7 115 87.0
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 1.0e-47 193.4 110 86.4
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.0e-47 193.4 116 82.8
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 1.0e-47 193.4 116 83.6
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.7e-47 192.6 113 85.0
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.7e-47 192.6 113 85.0
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 1.7e-47 192.6 116 83.6
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 1.7e-47 192.6 116 83.6
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 2.2e-47 192.2 113 85.8
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 2.9e-47 191.8 113 85.0
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 2.9e-47 191.8 113 85.8
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 2.9e-47 191.8 116 82.8
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 3.8e-47 191.4 116 83.6
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 3.8e-47 191.4 115 81.7
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 5.0e-47 191.0 116 83.6
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 5.0e-47 191.0 113 85.0
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 5.0e-47 191.0 113 85.8
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 6.5e-47 190.7 113 85.8
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 6.5e-47 190.7 116 82.8
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 8.5e-47 190.3 116 81.9
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 8.5e-47 190.3 116 81.9
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 8.5e-47 190.3 116 81.9
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 1.1e-46 189.9 116 82.8
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 1.4e-46 189.5 113 85.0
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.9e-46 189.1 113 84.1
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 2.5e-46 188.7 113 83.2
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 3.2e-46 188.3 113 85.0
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 3.2e-46 188.3 113 84.1
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 3.2e-46 188.3 113 84.1
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 3.2e-46 188.3 116 81.9
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 4.2e-46 188.0 113 83.2
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 4.2e-46 188.0 117 82.9
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 4.2e-46 188.0 113 82.3
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 5.5e-46 187.6 113 82.3
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 5.5e-46 187.6 116 81.9
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 5.5e-46 187.6 113 81.4
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 7.2e-46 187.2 113 81.4
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 7.2e-46 187.2 113 84.1
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 7.2e-46 187.2 113 83.2
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 7.2e-46 187.2 113 82.3
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 9.4e-46 186.8 113 83.2
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 9.4e-46 186.8 113 83.2
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 9.4e-46 186.8 113 83.2
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 1.2e-45 186.4 113 83.2
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.2e-45 186.4 113 81.4
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.2e-45 186.4 116 80.2
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 1.2e-45 186.4 117 82.9
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 1.6e-45 186.0 113 83.2
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 1.6e-45 186.0 113 81.4
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.6e-45 186.0 113 83.2
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.6e-45 186.0 113 83.2
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 3.6e-45 184.9 117 79.5
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 4.6e-45 184.5 113 83.2
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 4.6e-45 184.5 113 84.1
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 4.6e-45 184.5 113 85.0
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 4.6e-45 184.5 113 82.3
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 7.9e-45 183.7 113 84.1
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.0e-44 183.3 113 82.3
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.0e-44 183.3 113 82.3
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 1.0e-44 183.3 113 80.5
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 1.0e-44 183.3 113 84.1
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 1.4e-44 183.0 113 81.4
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 1.8e-44 182.6 116 80.2
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.3e-44 182.2 113 81.4
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 2.3e-44 182.2 116 80.2
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 3.0e-44 181.8 113 81.4
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 3.0e-44 181.8 113 81.4
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 3.0e-44 181.8 116 78.4
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 3.9e-44 181.4 118 80.5
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 3.9e-44 181.4 118 80.5
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 3.9e-44 181.4 118 80.5
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 5.1e-44 181.0 108 84.3
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 8.8e-44 180.3 111 82.0
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 8.8e-44 180.3 113 82.3
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 1.1e-43 179.9 118 81.4
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 3.3e-43 178.3 117 78.6
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 3.3e-43 178.3 116 80.2
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 4.3e-43 177.9 116 78.4
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 2.2e-42 175.6 113 77.0
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 3.7e-42 174.9 152 64.5
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 8.2e-42 173.7 126 72.2
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 1.1e-41 173.3 112 76.8
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 1.4e-41 172.9 105 81.9
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 3.1e-41 171.8 113 71.7
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 5.9e-40 167.5 200 51.5
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 2.2e-39 165.6 109 74.3
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 9.4e-38 160.2 89 88.8
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.6e-37 159.5 89 91.0
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 7.9e-37 157.1 109 73.4
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 2.3e-36 155.6 89 84.3
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 8.8e-36 153.7 88 87.5
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 1.1e-35 153.3 88 88.6
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 8.2e-34 147.1 109 74.3
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.8e-33 146.0 117 70.9
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 2.0e-32 142.5 91 76.9
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 2.9e-31 138.7 88 77.3
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 8.5e-31 137.1 102 70.6
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 2.5e-30 135.6 105 68.6
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 2.5e-30 135.6 105 68.6
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 4.2e-30 134.8 72 90.3
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 5.5e-30 134.4 81 81.5
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 7.2e-30 134.0 85 80.0
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 3.6e-29 131.7 73 89.0
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 1.4e-28 129.8 67 94.0
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 6.3e-26 120.9 83 75.9
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 8.2e-26 120.6 106 51.9
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 5.9e-24 114.4 76 71.1
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 1.7e-23 112.8 73 79.5
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 2.2e-23 112.5 73 79.5
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 2.1e-21 105.9 86 66.3
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 4.0e-20 101.7 71 69.0
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.5e-19 99.8 70 74.3
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 1.3e-18 96.7 107 56.1
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 6.5e-15 84.3 61 72.1
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 1.8e-12 76.3 51 74.5
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 2.6e-11 72.4 58 67.2
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 1.3e-10 70.1 48 72.9
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 1.3e-10 70.1 48 72.9
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 2.8e-10 68.9 41 80.5


User provided reference genes

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