Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 1.8e-122 442.6 219 100.0
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 9.6e-84 313.9 214 74.8
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 4.0e-82 308.5 214 74.3
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 5.3e-82 308.1 212 74.1
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 9.0e-82 307.4 213 73.7
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 3.8e-80 302.0 214 71.0
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 4.6e-78 295.0 212 72.2
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 1.3e-77 293.5 213 71.4
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 2.8e-75 285.8 215 69.8
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 1.1e-74 283.9 214 69.6
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 1.8e-74 283.1 213 67.1
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 3.4e-73 278.9 214 65.9
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 1.7e-72 276.6 215 65.1
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 1.7e-72 276.6 215 65.1
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 8.4e-72 274.2 213 65.7
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 4.2e-63 245.4 213 61.0
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 3.5e-62 242.3 212 59.9
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 2.3e-61 239.6 213 62.9
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 5.7e-60 235.0 212 57.1
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 2.4e-58 229.6 212 56.1
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 3.1e-58 229.2 212 56.1
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 5.3e-58 228.4 209 54.5
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 5.3e-58 228.4 212 59.0
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.2e-57 227.3 212 54.2
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.2e-57 227.3 212 54.2
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 2.0e-57 226.5 217 57.1
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.0e-56 224.2 212 54.2
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 1.3e-56 223.8 212 55.2
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 2.9e-56 222.6 213 56.3
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 7.2e-55 218.0 212 54.2
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 3.6e-54 215.7 212 56.1
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 3.0e-53 212.6 212 53.8
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 8.7e-53 211.1 212 55.7
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 1.5e-52 210.3 213 53.5
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 8.2e-51 204.5 212 51.9
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 2.4e-50 203.0 212 52.4
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 3.1e-50 202.6 209 55.0
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 9.1e-50 201.1 212 51.9
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 1.2e-49 200.7 212 49.5
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 3.4e-49 199.1 214 49.5
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 1.0e-48 197.6 212 50.0
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 1.0e-48 197.6 211 51.2
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 1.3e-48 197.2 212 50.9
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 3.8e-48 195.7 211 48.8
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 5.0e-48 195.3 212 51.9
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 8.5e-48 194.5 212 52.4
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 8.5e-48 194.5 212 49.5
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 1.4e-47 193.7 214 47.2
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 1.9e-47 193.4 212 52.4
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 3.2e-47 192.6 212 49.5
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 5.5e-47 191.8 212 51.9
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 5.5e-47 191.8 212 51.9
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 9.4e-47 191.0 212 45.3
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 1.6e-46 190.3 212 49.5
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 1.6e-46 190.3 214 47.7
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 2.1e-46 189.9 213 46.5
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.7e-46 189.5 212 51.4
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 4.6e-46 188.7 212 49.5
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 4.6e-46 188.7 213 48.8
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 1.8e-45 186.8 212 44.3
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 2.3e-45 186.4 212 46.2
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 2.3e-45 186.4 213 48.4
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 2.3e-45 186.4 213 48.4
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 3.0e-45 186.0 210 48.6
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 3.0e-45 186.0 212 50.5
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 6.7e-45 184.9 213 47.9
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 3.3e-44 182.6 211 50.2
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 5.7e-44 181.8 213 47.9
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 7.4e-44 181.4 212 47.2
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 1.7e-43 180.3 215 50.2
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 2.2e-43 179.9 213 48.4
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 6.3e-43 178.3 212 46.2
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 6.3e-43 178.3 212 46.2
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 1.4e-42 177.2 212 45.8
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 3.1e-42 176.0 180 53.3
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 4.1e-42 175.6 213 46.0
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 1.5e-41 173.7 214 44.9
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 3.4e-41 172.6 212 43.4
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 5.9e-41 171.8 213 43.7
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 1.3e-40 170.6 218 45.0
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 6.5e-40 168.3 215 41.4
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 8.5e-40 167.9 212 42.9
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 1.4e-39 167.2 213 40.8
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 1.9e-39 166.8 214 43.9
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 3.2e-39 166.0 213 42.7
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 4.2e-39 165.6 214 43.0
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 9.4e-39 164.5 212 44.3
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 1.2e-38 164.1 212 42.0
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.2e-38 164.1 212 44.3
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 7.9e-38 161.4 216 41.7
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 1.8e-37 160.2 216 41.2
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 3.3e-36 156.0 212 41.5
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 7.4e-36 154.8 214 42.1
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 9.7e-36 154.5 213 44.1
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 2.2e-35 153.3 219 41.1
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 3.7e-35 152.5 212 42.0
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 6.3e-35 151.8 212 40.1
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 2.4e-34 149.8 217 44.2
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 2.4e-34 149.8 222 44.1
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 2.4e-34 149.8 222 44.1
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 2.4e-34 149.8 217 44.2
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 4.1e-34 149.1 220 42.7
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 7.0e-34 148.3 212 40.1
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 2.0e-33 146.7 216 40.3
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 2.0e-33 146.7 215 41.4
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 2.6e-33 146.4 217 41.9
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 1.3e-32 144.1 214 41.6
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 5.0e-32 142.1 214 41.6
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 6.5e-32 141.7 215 41.4
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 8.5e-32 141.4 217 41.0
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 1.9e-31 140.2 216 39.8
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 4.2e-31 139.0 216 39.8
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 5.5e-31 138.7 214 40.7
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 9.4e-31 137.9 212 37.7
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 3.6e-30 136.0 222 40.1
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 4.7e-30 135.6 184 40.8
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 1.4e-29 134.0 214 36.4
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 1.3e-27 127.5 215 38.1
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 1.3e-27 127.5 212 39.2
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 1.8e-26 123.6 210 40.0
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 2.4e-26 123.2 116 59.5
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 2.0e-25 120.2 215 37.7
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 1.3e-24 117.5 219 36.5
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 9.4e-23 111.3 208 34.6
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 2.7e-17 93.2 113 45.1
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 2.1e-14 83.6 183 31.1
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 5.2e-13 79.0 225 32.0
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 8.8e-13 78.2 215 29.3
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 2.0e-12 77.0 181 30.9
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 4.4e-12 75.9 68 64.7
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 8.3e-11 71.6 213 30.5
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 1.6e-09 67.4 177 28.8
Prupe.6G254700 Prunus persica HOM05D002515 ORTHO05D002722 1.5e-07 60.8 184 31.0
Dinv31022 Davidia involucrata HOM05D033086 ORTHO05D005796 4.7e-06 55.8 83 39.8
Dinv31080 Davidia involucrata HOM05D033086 ORTHO05D005796 4.7e-06 55.8 83 39.8
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 8.0e-06 55.1 198 27.8


User provided reference genes

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