Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 2169.0 1078 100.0
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1796.9 1047 83.1
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1778.1 1049 82.5
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1766.9 1055 82.0
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1756.9 1060 80.2
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1753.0 1064 80.1
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1753.0 1057 80.9
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1739.9 1042 81.1
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1736.5 1046 80.9
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1708.7 1050 79.4
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1692.6 1048 78.6
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1647.5 1048 78.1
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1503.8 1047 69.8
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1478.4 1058 67.9
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1477.6 1061 67.5
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1471.4 1044 69.3
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1457.2 1044 67.8
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1456.0 1054 67.2
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1451.0 1068 67.7
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1440.2 1053 66.1
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1440.2 1046 66.8
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1436.0 1024 67.9
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1426.8 1049 65.8
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1419.4 1055 65.1
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1416.0 1049 66.0
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1414.8 1054 64.4
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1413.3 1080 66.0
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1412.5 1057 65.0
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1412.1 1051 66.5
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1408.7 1044 66.4
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1408.3 1060 65.1
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1407.5 1046 65.8
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1405.2 1052 64.5
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1384.0 1083 62.8
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1380.9 1059 64.0
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1379.4 1046 65.2
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1379.0 1051 64.6
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1376.3 1052 64.7
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1375.9 1049 64.4
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1374.4 1052 64.6
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1369.8 1047 63.8
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1369.8 1062 63.6
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1365.9 1059 64.2
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1359.7 1047 63.0
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1355.9 1044 64.4
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1355.1 1070 62.7
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1351.3 1065 63.8
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1346.3 1044 62.4
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1345.9 1063 60.9
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1345.1 1044 62.8
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1341.3 1050 62.5
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1337.4 1048 62.8
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1335.9 1169 58.5
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1333.9 1048 62.7
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1333.2 1082 61.7
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1327.4 1048 62.5
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1327.0 1048 62.5
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1327.0 1050 61.8
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1308.9 1090 59.7
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1306.2 1069 60.2
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1303.9 1049 60.5
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1297.7 1069 59.9
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1295.8 1011 62.6
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1289.2 1064 60.6
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1283.1 1093 59.1
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1281.5 1082 58.6
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1278.8 1059 60.2
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1278.1 1081 59.2
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1276.2 1049 61.6
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1275.4 1054 59.4
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1269.6 1055 59.0
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1265.0 1054 58.6
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1261.1 1108 57.5
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1258.4 1047 59.8
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1258.0 1046 58.4
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1255.7 1047 59.6
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1251.9 1130 56.3
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1226.8 1055 59.1
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1226.5 1047 58.9
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1221.5 1050 57.3
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1198.7 1047 56.3
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1190.6 1039 56.8
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1180.6 1051 57.3
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1179.1 1065 56.6
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1166.4 851 66.2
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1164.8 1048 56.2
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1164.8 1176 52.9
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1150.6 1141 53.2
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 0.0e+00 1149.4 680 82.6
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1109.4 1035 54.3
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1102.0 1024 53.3
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 1.5e-299 1033.1 1054 51.7
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 2.0e-299 1032.7 866 58.7
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 5.2e-292 1008.1 1022 50.0
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 2.8e-277 959.1 896 55.7
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 8.7e-271 937.6 884 56.4
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 4.3e-254 882.1 1068 46.0
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 2.5e-241 839.7 1056 43.3
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 3.7e-221 772.7 732 54.1
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 6.1e-216 755.4 704 54.5
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 9.8e-214 748.0 704 52.6
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 2.9e-210 736.5 720 54.2
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 5.2e-199 699.1 1073 37.5
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 4.9e-197 692.6 542 64.2
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 3.9e-194 682.9 838 43.9
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 4.3e-193 679.5 508 64.0
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 4.3e-193 679.5 820 46.2
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 1.1e-188 664.8 682 51.2
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 3.6e-184 649.8 1049 39.1
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 4.7e-184 649.4 501 61.7
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 8.1e-184 648.7 856 41.0
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 2.9e-173 613.6 489 61.6
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 2.4e-172 610.5 598 53.2
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.6e-163 581.3 505 56.4
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 2.9e-157 560.5 340 79.7
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 1.8e-154 551.2 438 62.8
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 1.4e-140 505.0 379 65.2
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.4e-119 434.5 345 61.7
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 6.5e-117 426.4 453 47.5
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 2.5e-116 424.5 850 33.1
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 8.0e-107 392.9 350 57.1
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 1.6e-94 352.1 1124 27.9
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 4.5e-94 350.5 530 41.5
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.0e-90 339.3 288 62.5
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 1.7e-85 322.0 374 48.7
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 2.1e-75 288.5 256 56.6
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 2.6e-73 281.6 972 26.5
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 1.1e-71 276.2 417 41.7
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 3.2e-71 274.6 211 63.5
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 2.5e-68 265.0 166 77.1
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 1.8e-66 258.8 177 71.2
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 2.2e-64 251.9 213 57.7
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 5.6e-60 237.3 206 54.9
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 2.8e-59 235.0 271 47.2
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 7.3e-52 210.3 1176 24.1
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 7.6e-49 200.3 316 39.6
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 1.3e-43 183.0 208 47.6
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 2.9e-40 171.8 326 33.7
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 3.5e-38 164.9 109 73.4
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 8.7e-37 160.2 151 58.3
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 1.9e-36 159.1 165 55.8
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.3e-35 156.4 191 42.9
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 1.2e-33 149.8 95 76.8
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.2e-32 145.6 113 64.6
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 2.5e-28 132.1 99 60.6
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 6.3e-27 127.5 71 81.7
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 1.1e-26 126.7 107 60.7
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 4.5e-25 121.3 124 53.2
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 6.5e-24 117.5 167 38.9
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 1.1e-23 116.7 88 63.6
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 3.2e-23 115.2 70 75.7
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 7.2e-23 114.0 99 58.6
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 1.9e-15 89.4 88 46.6
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 3.0e-13 82.0 104 41.3
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 2.8e-11 75.5 45 77.8
Psat0s2980g0040 Pisum sativum HOM05D000709 ORTHO05D002401 2.4e-10 72.4 77 61.0
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 3.5e-09 68.6 75 46.7


User provided reference genes

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