Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 1.6e-271 938.7 448 100.0
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.8e-215 751.9 450 78.2
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 5.3e-214 747.7 448 77.9
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 1.5e-213 746.1 450 78.0
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 1.5e-213 746.1 448 78.1
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 2.6e-213 745.3 448 77.5
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 5.9e-213 744.2 446 77.6
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 6.5e-212 740.7 448 76.6
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 9.4e-211 736.9 446 77.6
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 9.4e-211 736.9 446 77.4
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.6e-210 736.1 450 76.2
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.6e-210 736.1 450 76.2
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.7e-210 735.3 449 77.5
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 2.7e-210 735.3 448 76.8
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 4.7e-210 734.6 449 77.3
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 7.9e-210 733.8 449 77.3
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 7.9e-210 733.8 455 76.0
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 3.0e-209 731.9 456 75.7
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 3.9e-209 731.5 450 75.6
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 5.1e-209 731.1 446 76.7
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 6.7e-209 730.7 449 76.6
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 2.0e-208 729.2 441 76.6
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 4.4e-208 728.0 454 75.8
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 5.7e-208 727.6 446 77.1
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 1.3e-207 726.5 448 75.4
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.7e-207 726.1 448 75.2
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 4.8e-207 724.5 434 79.5
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 1.4e-206 723.0 450 75.3
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 2.4e-206 722.2 433 78.5
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 4.1e-206 721.5 448 76.3
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 1.2e-205 719.9 450 74.4
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 1.2e-205 719.9 433 79.4
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 2.6e-205 718.8 433 77.8
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 3.4e-205 718.4 429 78.1
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 5.9e-205 717.6 432 78.0
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 7.7e-205 717.2 464 74.1
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 8.5e-204 713.8 449 74.2
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 1.9e-203 712.6 452 73.5
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 2.5e-203 712.2 449 74.8
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 5.5e-203 711.1 446 73.3
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 5.5e-203 711.1 446 74.9
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 6.1e-202 707.6 448 73.0
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.0e-201 706.8 429 76.7
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 8.8e-201 703.7 449 72.8
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 3.3e-200 701.8 435 75.6
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 5.7e-200 701.0 448 72.3
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 9.7e-200 700.3 459 73.0
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 3.1e-198 695.3 446 72.9
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.3e-196 689.9 448 72.8
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 3.8e-196 688.3 444 73.6
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 6.5e-196 687.6 442 72.9
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 8.5e-196 687.2 453 71.7
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 1.9e-195 686.0 426 75.8
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 5.5e-195 684.5 453 71.5
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 3.3e-192 675.2 447 70.0
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 3.3e-192 675.2 436 72.5
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 7.5e-192 674.1 447 72.0
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.8e-190 669.5 461 69.2
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 4.1e-190 668.3 451 69.2
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 2.0e-189 666.0 450 71.1
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.0e-188 661.4 462 68.6
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 6.5e-188 661.0 440 70.2
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.1e-187 660.2 454 70.0
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 4.2e-187 658.3 450 70.0
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 5.5e-187 657.9 440 72.7
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 9.4e-187 657.1 446 69.7
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 8.0e-186 654.1 446 69.3
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 1.4e-185 653.3 477 68.3
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.8e-185 652.9 434 71.0
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 1.8e-185 652.9 446 68.2
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 3.0e-185 652.1 446 68.8
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 4.0e-185 651.7 428 72.4
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.0e-184 649.4 454 68.1
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 2.0e-184 649.4 387 78.0
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 9.8e-184 647.1 455 68.1
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.7e-183 646.4 408 74.5
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 1.6e-181 639.8 446 65.5
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.3e-180 636.7 448 69.4
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 2.3e-180 636.0 449 66.1
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 5.0e-180 634.8 464 64.9
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.5e-179 633.3 449 65.5
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.2e-179 631.7 449 65.7
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 4.2e-179 631.7 448 65.0
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 4.2e-179 631.7 451 65.2
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 5.5e-179 631.3 450 65.1
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 1.2e-178 630.2 451 65.0
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 3.6e-178 628.6 450 64.9
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 3.6e-178 628.6 450 64.9
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 3.6e-178 628.6 449 65.5
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 6.1e-178 627.9 458 67.2
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 2.0e-176 622.9 431 67.3
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 4.4e-176 621.7 450 64.7
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 7.5e-176 620.9 488 62.7
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 1.3e-175 620.2 445 66.1
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.0e-173 612.8 453 65.1
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 5.0e-172 608.2 359 79.1
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.9e-171 606.3 447 65.3
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 5.6e-171 604.7 455 64.8
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 1.4e-169 600.1 419 65.2
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 5.8e-168 594.7 446 65.2
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 1.7e-167 593.2 443 62.8
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 1.7e-167 593.2 377 74.5
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.1e-166 590.5 385 71.7
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.9e-163 579.7 526 57.0
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 8.0e-162 574.3 403 66.5
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 2.3e-161 572.8 478 58.6
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 4.0e-161 572.0 392 67.3
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.6e-160 569.3 398 68.6
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 5.8e-160 568.2 380 71.8
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 9.2e-158 560.8 413 66.6
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 1.3e-156 557.0 448 57.1
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 8.9e-153 544.3 466 59.7
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 2.0e-152 543.1 447 55.5
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 2.4e-150 536.2 451 54.3
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 7.8e-149 531.2 461 55.5
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.1e-147 527.3 342 74.3
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 9.6e-139 497.7 427 57.8
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 1.2e-136 490.7 473 54.3
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 9.6e-131 471.1 290 77.9
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 6.0e-125 451.8 412 58.5
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 5.6e-123 445.3 458 50.9
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.7e-119 433.7 347 59.7
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.2e-118 429.5 347 59.9
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.2e-117 427.6 290 69.3
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 4.6e-117 425.6 325 66.2
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.3e-116 424.1 453 52.8
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 1.3e-111 407.5 278 69.4
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 3.7e-106 389.4 393 48.3
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 2.0e-91 340.5 420 43.3
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.2e-90 337.0 401 42.1
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 2.8e-90 336.7 201 74.6
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 4.4e-83 312.8 281 59.1
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 1.3e-79 301.2 213 68.5
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 8.3e-74 282.0 175 76.6
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 9.2e-57 225.3 215 59.5
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 4.7e-53 213.0 119 78.2
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 1.8e-52 211.1 189 54.0
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 3.4e-51 206.8 182 56.0
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 4.3e-46 189.9 155 59.4
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.1e-41 175.3 241 44.0
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.4e-41 172.9 239 43.9
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 3.9e-39 166.8 232 41.8
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 3.9e-39 166.8 199 46.7
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 6.2e-37 159.5 85 83.5
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 3.1e-36 157.1 109 65.1
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 2.0e-35 154.5 94 76.6
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.1e-28 130.6 239 38.5
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 2.3e-23 114.4 62 83.9
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.0e-23 114.0 85 63.5
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 2.1e-21 107.8 71 64.8
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 4.0e-20 103.6 70 71.4
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 4.2e-17 93.6 58 65.5
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.4e-12 78.6 77 57.1
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 9.3e-09 65.9 36 77.8
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 5.1e-07 60.1 61 55.7
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 8.7e-07 59.3 42 64.3


User provided reference genes

Program Settings