Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 3.1e-69 265.0 135 100.0
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 6.4e-46 187.6 137 73.0
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 6.6e-43 177.6 136 70.6
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 7.3e-42 174.1 138 64.5
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 6.2e-41 171.0 133 70.7
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 4.4e-39 164.9 138 60.9
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 2.4e-37 159.1 134 61.2
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 3.2e-37 158.7 138 58.7
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 1.6e-36 156.4 137 65.0
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 3.5e-36 155.2 133 60.2
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.0e-35 153.7 125 66.4
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 3.0e-35 152.1 143 64.3
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 5.1e-35 151.4 139 63.3
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 4.3e-34 148.3 138 60.1
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 7.3e-34 147.5 138 58.0
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 1.2e-33 146.7 136 59.6
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 8.9e-32 140.6 138 55.8
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 4.4e-31 138.3 138 53.6
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 1.7e-30 136.3 135 56.3
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.4e-29 133.3 132 56.8
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 1.9e-29 132.9 110 66.4
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.2e-29 132.1 132 56.8
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 5.4e-29 131.3 131 54.2
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 5.4e-29 131.3 135 52.6
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 5.4e-29 131.3 134 56.0
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 9.3e-29 130.6 136 55.9
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 1.2e-28 130.2 138 53.6
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.2e-28 130.2 132 56.1
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 1.6e-28 129.8 132 56.1
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.6e-28 129.8 132 56.1
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 2.1e-28 129.4 139 54.0
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 2.7e-28 129.0 142 54.9
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 3.5e-28 128.6 126 57.1
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 7.8e-28 127.5 140 52.1
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.0e-27 127.1 136 52.9
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 1.3e-27 126.7 127 52.0
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.5e-26 122.5 136 52.2
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 5.6e-26 121.3 131 51.9
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.6e-26 120.6 131 52.7
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 9.6e-26 120.6 131 52.7
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 1.3e-25 120.2 137 51.1
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.6e-25 119.8 135 53.3
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 8.1e-25 117.5 127 49.6
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 1.4e-24 116.7 129 54.3
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.8e-24 116.3 124 51.6
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.4e-24 115.9 131 52.7
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.1e-24 115.5 124 52.4
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.1e-24 115.5 124 51.6
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 1.2e-23 113.6 133 50.4
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.2e-23 113.6 129 51.2
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 2.0e-23 112.8 128 50.0
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 3.4e-23 112.1 133 50.4
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 3.4e-23 112.1 123 51.2
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 7.6e-23 110.9 124 49.2
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 2.2e-22 109.4 131 48.1
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 6.4e-22 107.8 140 45.0
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.9e-21 106.3 122 48.4
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 2.4e-21 105.9 128 44.5
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 3.2e-21 105.5 130 50.8
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 5.4e-21 104.8 136 47.8
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 7.1e-21 104.4 114 48.2
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 7.1e-21 104.4 123 44.7
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 2.7e-20 102.4 121 50.4
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 3.5e-20 102.1 131 45.0
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 3.5e-20 102.1 128 46.9
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 4.6e-20 101.7 133 46.6
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 7.9e-20 100.9 132 43.2
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 1.0e-19 100.5 115 45.2
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 1.0e-19 100.5 136 45.6
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 3.0e-19 99.0 137 43.8
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.1e-19 98.2 123 54.5
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 1.1e-18 97.1 142 47.9
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 3.3e-18 95.5 123 43.9
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 5.6e-18 94.7 112 52.7
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 1.6e-17 93.2 134 43.3
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.6e-17 92.0 132 48.5
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 4.8e-17 91.7 94 51.1
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 8.1e-17 90.9 99 50.5
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 1.1e-16 90.5 116 46.6
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 1.4e-16 90.1 138 42.8
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 6.9e-16 87.8 132 42.4
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 9.0e-16 87.4 148 40.5
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 1.2e-15 87.0 135 43.0
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 2.0e-15 86.3 148 41.9
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.6e-15 85.9 130 40.8
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 3.4e-15 85.5 128 43.8
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 5.8e-15 84.7 129 40.3
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 5.8e-15 84.7 134 42.5
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 5.8e-15 84.7 148 42.6
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 7.6e-15 84.3 127 37.8
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 9.9e-15 84.0 127 37.8
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 1.3e-14 83.6 127 37.8
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 2.9e-14 82.4 126 39.7
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 2.9e-14 82.4 122 41.0
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 6.4e-14 81.3 130 41.5
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 1.1e-13 80.5 110 42.7
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.4e-13 80.1 112 47.3
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 1.2e-12 77.0 102 43.1
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 1.2e-12 77.0 107 43.0
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 1.2e-12 77.0 110 46.4
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 1.6e-12 76.6 115 43.5
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 2.7e-12 75.9 107 42.1
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 2.7e-12 75.9 107 42.1
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 4.6e-12 75.1 130 33.8
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 6.0e-12 74.7 111 42.3
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 6.0e-12 74.7 111 42.3
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 6.0e-12 74.7 130 34.6
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 7.9e-12 74.3 143 39.2
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 3.0e-11 72.4 103 43.7
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 3.0e-11 72.4 103 43.7
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 3.9e-11 72.0 103 42.7
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 5.1e-11 71.6 112 42.9
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 8.7e-11 70.9 112 42.0
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 1.1e-10 70.5 109 42.2
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 1.9e-10 69.7 110 43.6
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 4.3e-10 68.6 110 39.1
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 9.6e-10 67.4 121 33.1
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 9.6e-10 67.4 130 36.2
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 9.6e-10 67.4 130 36.2
CARHR274330 Cardamine hirsuta HOM05D010860 ORTHO05D005733 9.6e-10 67.4 135 34.8
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 9.6e-10 67.4 113 42.5
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 2.8e-09 65.9 135 33.3
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 3.7e-09 65.5 110 37.3
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 4.8e-09 65.1 113 41.6
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 1.1e-08 63.9 119 36.1
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 3.1e-08 62.4 131 36.6
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 9.0e-08 60.8 82 43.9
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 1.2e-07 60.5 131 36.6
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 7.6e-07 57.8 98 45.9
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 7.6e-07 57.8 130 33.1
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 1.0e-06 57.4 131 35.1
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 2.2e-06 56.2 125 36.0
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 3.8e-06 55.5 127 31.5
BcaC04g19726 Brassica carinata HOM05D010860 ORTHO05D005733 4.9e-06 55.1 131 34.4


User provided reference genes

Program Settings