Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 1.2e-62 243.0 128 100.0
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 5.3e-26 121.3 94 67.0
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 1.5e-25 119.8 95 68.4
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 1.0e-24 117.1 110 58.2
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 2.0e-20 102.8 94 61.7
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 2.6e-20 102.4 94 60.6
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 2.6e-20 102.4 92 58.7
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 5.7e-20 101.3 93 59.1
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 1.3e-19 100.1 94 59.6
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 1.2e-17 93.6 94 57.4
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.0e-16 90.5 96 46.9
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.8e-16 88.6 111 47.7
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 5.0e-16 88.2 95 49.5
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 8.5e-16 87.4 97 54.6
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.5e-15 86.7 96 50.0
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.5e-15 86.7 88 51.1
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.9e-15 86.3 96 49.0
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.2e-15 85.1 95 45.3
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 5.5e-15 84.7 94 50.0
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.1e-14 82.8 79 55.7
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.7e-14 82.4 89 50.6
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.8e-13 79.7 120 41.7
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.0e-13 78.6 96 43.8
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.0e-13 78.6 95 44.2
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 8.8e-13 77.4 90 45.6
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 8.8e-13 77.4 92 48.9
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 8.8e-13 77.4 92 48.9
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.0e-12 76.3 76 52.6
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.0e-12 76.3 96 44.8
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 2.6e-12 75.9 90 44.4
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 2.6e-12 75.9 92 45.7
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 4.4e-12 75.1 100 44.0
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 7.5e-12 74.3 97 45.4
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 7.5e-12 74.3 90 45.6
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 7.5e-12 74.3 95 44.2
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.2e-11 72.8 84 47.6
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.2e-11 72.8 95 43.2
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.8e-11 72.4 98 44.9
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 4.8e-11 71.6 88 44.3
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 4.8e-11 71.6 135 36.3
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 4.8e-11 71.6 88 44.3
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 6.3e-11 71.2 88 40.9
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 6.3e-11 71.2 96 45.8
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 8.3e-11 70.9 93 39.8
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.1e-10 70.5 93 43.0
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.4e-10 70.1 91 46.2
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 1.4e-10 70.1 94 37.2
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.4e-10 70.1 97 43.3
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.8e-10 69.7 96 44.8
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.8e-10 69.7 95 44.2
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 3.1e-10 68.9 103 40.8
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 3.1e-10 68.9 125 36.8
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.1e-10 68.9 88 39.8
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.1e-10 68.9 95 38.9
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.1e-10 68.9 47 61.7
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.1e-10 68.6 90 45.6
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 5.4e-10 68.2 95 40.0
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 5.4e-10 68.2 47 59.6
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 7.0e-10 67.8 102 42.2
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 9.1e-10 67.4 49 59.2
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 9.1e-10 67.4 102 42.2
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 9.1e-10 67.4 98 40.8
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 1.6e-09 66.6 70 45.7
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.6e-09 66.6 88 39.8
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 1.6e-09 66.6 97 47.4
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.6e-09 66.6 83 44.6
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 2.0e-09 66.2 79 48.1
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 4.5e-09 65.1 88 40.9
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 5.9e-09 64.7 88 43.2
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.3e-08 63.5 91 44.0
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 1.3e-08 63.5 92 39.1
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.7e-08 63.2 88 47.7
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.7e-08 63.2 90 43.3
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 2.2e-08 62.8 87 37.9
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 2.2e-08 62.8 74 44.6
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.8e-08 62.0 90 43.3
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 3.8e-08 62.0 92 39.1
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 5.0e-08 61.6 51 56.9
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 5.0e-08 61.6 99 42.4
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 5.0e-08 61.6 97 45.4
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 5.0e-08 61.6 85 40.0
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 6.5e-08 61.2 94 38.3
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 8.5e-08 60.8 87 41.4
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 8.5e-08 60.8 87 43.7
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 8.5e-08 60.8 89 41.6
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 1.5e-07 60.1 90 44.4
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.5e-07 60.1 96 42.7
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 1.5e-07 60.1 95 38.9
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 1.9e-07 59.7 97 42.3
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 1.9e-07 59.7 94 40.4
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.5e-07 59.3 83 37.3
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 2.5e-07 59.3 75 42.7
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.5e-07 59.3 75 42.7
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 2.5e-07 59.3 87 41.4
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 2.5e-07 59.3 79 43.0
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 3.2e-07 58.9 82 42.7
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 3.2e-07 58.9 97 43.3
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 4.2e-07 58.5 80 38.8
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 4.2e-07 58.5 41 58.5
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 4.2e-07 58.5 41 58.5
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.2e-07 58.5 75 42.7
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.2e-07 58.5 75 42.7
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 4.2e-07 58.5 56 50.0
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 4.2e-07 58.5 90 40.0
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 4.2e-07 58.5 75 44.0
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 5.5e-07 58.2 50 50.0
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 7.2e-07 57.8 79 41.8
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 7.2e-07 57.8 75 44.0
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 7.2e-07 57.8 88 40.9
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 9.4e-07 57.4 95 35.8
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 9.4e-07 57.4 97 39.2
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 1.2e-06 57.0 75 41.3
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 1.2e-06 57.0 75 41.3
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 1.2e-06 57.0 88 37.5
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-06 57.0 50 56.0
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 1.2e-06 57.0 90 41.1
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.6e-06 56.6 100 37.0
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 1.6e-06 56.6 93 43.0
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 1.6e-06 56.6 86 38.4
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.1e-06 56.2 83 38.6
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 2.7e-06 55.8 86 38.4
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 2.7e-06 55.8 98 35.7
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.7e-06 55.8 83 38.6
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.7e-06 55.8 37 64.9
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 3.6e-06 55.5 33 66.7
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 3.6e-06 55.5 87 42.5
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 3.6e-06 55.5 85 40.0
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 4.7e-06 55.1 83 39.8
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 6.1e-06 54.7 90 41.1
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 6.1e-06 54.7 90 41.1
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 6.1e-06 54.7 89 38.2
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 6.1e-06 54.7 35 62.9
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 8.0e-06 54.3 45 48.9


User provided reference genes

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