Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 0.0e+00 1123.6 719 100.0
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 8.2e-132 475.3 707 53.6
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 7.7e-114 415.6 727 49.4
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 8.5e-113 412.1 713 52.3
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 1.6e-111 407.9 752 49.6
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 9.7e-109 398.7 723 51.6
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 1.7e-105 387.9 651 43.5
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 8.5e-105 385.6 724 51.1
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 7.2e-104 382.5 710 51.0
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 1.2e-103 381.7 724 45.7
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 2.2e-100 370.9 711 49.8
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 1.8e-99 367.9 690 51.6
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 3.6e-95 353.6 683 50.4
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 3.6e-95 353.6 683 50.4
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 3.6e-95 353.6 633 47.2
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 2.4e-91 340.9 757 40.2
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 4.0e-86 323.6 650 40.9
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 4.4e-85 320.1 657 47.9
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 4.9e-84 316.6 698 47.1
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 1.4e-83 315.1 642 48.8
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 1.3e-81 308.5 672 43.9
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 2.1e-79 301.2 700 38.1
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.3e-76 292.0 702 41.5
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 3.2e-75 287.3 663 33.9
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.9e-72 278.1 674 42.7
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.2e-71 275.4 672 37.4
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 1.0e-70 272.3 675 41.5
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 6.8e-70 269.6 647 42.7
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 2.0e-69 268.1 565 46.5
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 4.4e-69 266.9 481 45.1
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 4.9e-68 263.5 687 42.5
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 4.9e-68 263.5 682 39.7
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.1e-67 262.3 713 40.3
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.4e-67 261.9 646 36.8
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.9e-67 261.5 481 44.7
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 9.2e-67 259.2 506 41.5
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 2.7e-66 257.7 632 42.9
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.0e-65 255.8 685 39.0
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 7.3e-64 249.6 743 44.4
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 7.3e-64 249.6 670 38.5
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.4e-62 245.4 644 35.7
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 1.8e-62 245.0 569 44.1
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 2.3e-62 244.6 664 34.2
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 6.8e-62 243.0 447 44.7
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 3.7e-60 237.3 677 39.6
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 5.4e-59 233.4 470 41.9
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 2.1e-58 231.5 676 37.3
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 2.3e-57 228.0 584 37.5
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 5.1e-57 226.9 716 36.6
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 8.1e-55 219.5 632 38.4
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.8e-54 218.4 734 42.1
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.8e-54 218.4 670 35.5
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 3.1e-54 217.6 684 38.5
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 8.9e-54 216.1 686 39.7
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 1.5e-53 215.3 677 37.8
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 1.5e-53 215.3 713 40.0
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 5.8e-53 213.4 718 36.2
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 7.6e-53 213.0 726 35.8
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 9.9e-53 212.6 667 38.1
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 8.4e-52 209.5 650 29.8
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 1.4e-51 208.8 662 41.2
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 3.2e-51 207.6 628 40.1
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 5.4e-51 206.8 451 37.7
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 1.2e-50 205.7 670 34.9
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 2.1e-50 204.9 571 32.6
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 2.7e-50 204.5 660 36.5
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 4.6e-50 203.8 426 40.4
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 7.8e-50 203.0 664 38.3
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 1.1e-48 199.1 447 34.7
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 3.3e-48 197.6 704 39.6
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 7.3e-48 196.4 671 34.7
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 2.8e-47 194.5 663 38.9
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 8.1e-47 193.0 639 36.8
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 1.1e-46 192.6 455 37.1
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 4.0e-46 190.7 593 42.3
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 8.9e-46 189.5 667 36.7
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 5.8e-45 186.8 680 40.3
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 9.9e-45 186.0 670 34.3
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 1.3e-44 185.7 476 31.9
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 1.3e-44 185.7 411 41.6
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 1.7e-44 185.3 363 41.0
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 4.9e-44 183.7 680 40.3
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 6.4e-44 183.3 659 34.7
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 4.2e-43 180.6 637 33.9
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 5.4e-43 180.3 335 38.8
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 2.7e-42 177.9 454 37.9
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 2.7e-42 177.9 674 35.6
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 3.5e-42 177.6 664 32.1
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 4.6e-42 177.2 641 32.8
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 2.3e-41 174.9 591 32.8
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 6.6e-41 173.3 453 38.0
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 8.7e-41 172.9 690 37.1
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 5.6e-40 170.2 321 48.6
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.3e-39 169.1 301 56.5
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 2.8e-39 167.9 701 32.2
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 1.2e-37 162.5 686 27.3
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 4.9e-36 157.1 453 36.6
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 4.9e-36 157.1 453 36.6
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 4.9e-36 157.1 453 36.6
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 3.2e-35 154.5 665 32.2
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 3.5e-34 151.0 650 27.7
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 7.9e-34 149.8 733 37.8
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 2.3e-33 148.3 508 30.5
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 2.3e-33 148.3 434 33.9
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 2.5e-32 144.8 648 32.6
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 5.6e-32 143.7 522 29.3
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 2.1e-31 141.7 474 29.1
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.1e-31 141.7 235 41.3
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 6.2e-31 140.2 454 38.1
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 3.8e-28 131.0 608 30.4
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 4.9e-28 130.6 672 29.8
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 2.4e-27 128.3 363 30.0
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 2.1e-26 125.2 659 31.4
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 7.9e-26 123.2 687 34.6
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.0e-25 122.9 572 25.0
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 1.0e-25 122.9 717 30.4
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 5.1e-25 120.6 167 45.5
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 1.5e-24 119.0 485 31.5
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 2.5e-24 118.2 518 31.3
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 4.3e-24 117.5 452 28.8
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 4.3e-24 117.5 145 49.0
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 9.6e-24 116.3 677 35.0
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.8e-23 114.8 266 38.3
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 4.8e-23 114.0 478 31.8
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 2.4e-22 111.7 681 31.4
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 4.0e-22 110.9 525 29.9
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 4.0e-22 110.9 669 30.9
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 9.0e-22 109.8 636 36.8
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 3.4e-21 107.8 523 30.8
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 1.0e-20 106.3 227 34.4
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.1e-19 102.8 115 53.0
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.4e-19 102.4 729 34.0
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 5.5e-19 100.5 643 30.8
MD09G1213300 Malus domestica HOM05D004642 ORTHO05D005466 7.1e-19 100.1 99 58.6
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 2.7e-18 98.2 466 29.6
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 1.8e-17 95.5 660 33.3
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 2.3e-17 95.1 400 32.8
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 1.5e-16 92.4 408 22.5
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 4.3e-16 90.9 486 31.1
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 2.4e-14 85.1 503 29.4
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.0e-12 79.7 418 22.7
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 1.4e-11 75.9 237 25.7
A01p38100 Brassica napus HOM05D015723 ORTHO05D003275 1.0e-09 69.7 382 24.6
AL776U10010 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 3.9e-09 67.8 95 48.4
MD09G1213400 Malus domestica HOM05D004642 ORTHO05D005466 5.1e-09 67.4 118 39.8
Cpa.g.sc1188.1 Carica papaya HOM05D004642 ORTHO05D005466 1.4e-06 59.3 303 37.3


User provided reference genes

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