Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 0.0e+00 1279.6 653 100.0
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 3.8e-213 745.3 660 61.4
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 4.2e-212 741.9 660 61.1
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 7.0e-207 724.5 784 54.7
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.2e-201 707.2 663 58.2
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 1.5e-201 706.8 698 56.4
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 7.5e-201 704.5 657 58.4
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 7.8e-198 694.5 693 56.0
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 1.4e-194 683.7 630 60.3
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 2.2e-192 676.4 760 52.9
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 5.6e-188 661.8 657 54.9
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 2.2e-184 649.8 691 54.4
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 3.7e-184 649.0 869 45.2
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 3.0e-181 639.4 663 56.4
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 1.2e-177 627.5 609 56.2
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 5.4e-175 618.6 677 51.0
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 2.8e-171 606.3 661 54.5
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 1.1e-159 567.8 690 47.8
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 3.5e-158 562.8 581 54.9
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 3.1e-154 549.7 740 43.2
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 3.1e-154 549.7 694 46.5
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 6.9e-154 548.5 758 44.3
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 3.4e-153 546.2 448 62.5
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 2.9e-152 543.1 586 51.5
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.1e-148 531.2 676 47.6
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 1.1e-146 524.6 725 43.4
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 2.9e-144 516.5 678 45.0
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.2e-142 511.1 760 40.7
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 3.5e-142 509.6 626 47.6
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 5.1e-141 505.8 760 40.9
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 2.5e-140 503.4 681 43.6
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 7.4e-140 501.9 660 45.3
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 1.0e-136 491.5 683 44.8
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 1.9e-135 487.3 618 47.6
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 2.7e-134 483.4 670 44.3
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 4.6e-134 482.6 710 42.7
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 6.1e-134 482.3 689 43.0
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 3.7e-131 473.0 634 45.1
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.6e-129 466.8 747 39.5
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.3e-128 464.5 658 44.1
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 2.9e-128 463.4 679 43.4
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 1.6e-126 457.6 679 42.6
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 3.9e-125 453.0 662 42.0
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 3.9e-125 453.0 698 41.0
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 1.5e-124 451.1 637 44.4
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 1.3e-123 448.0 670 40.4
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 6.3e-123 445.7 662 42.0
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.8e-122 444.1 725 39.7
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 6.5e-120 435.6 670 40.0
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 6.5e-120 435.6 750 37.7
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 9.4e-119 431.8 849 35.7
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 6.1e-118 429.1 749 38.5
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 2.2e-115 420.6 665 40.5
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 2.0e-113 414.1 797 36.5
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 2.7e-110 403.7 842 35.4
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 6.8e-109 399.1 668 38.6
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 2.6e-108 397.1 407 54.5
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 5.0e-104 382.9 747 35.6
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 4.7e-102 376.3 351 59.3
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 5.2e-101 372.9 554 41.5
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 5.2e-101 372.9 335 58.8
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 8.3e-99 365.5 469 45.4
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 4.1e-98 363.2 644 36.3
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 5.9e-97 359.4 722 36.0
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 1.3e-96 358.2 779 35.2
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 3.8e-96 356.7 796 35.3
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 8.6e-96 355.5 652 37.7
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 1.1e-95 355.1 644 37.1
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 1.5e-95 354.8 668 37.1
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 3.0e-93 347.1 653 35.7
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.0e-93 347.1 319 56.4
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 3.0e-93 347.1 372 52.4
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 1.2e-92 345.1 698 34.4
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.0e-92 344.4 792 33.7
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 2.0e-92 344.4 691 36.9
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 3.4e-92 343.6 670 36.1
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 3.4e-92 343.6 700 33.9
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 5.7e-92 342.8 658 35.3
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.3e-91 341.7 729 34.4
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 6.3e-91 339.3 284 62.3
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 8.3e-91 339.0 326 54.6
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 3.2e-90 337.0 627 35.7
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 7.0e-90 335.9 657 35.6
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.6e-89 334.7 802 31.7
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 1.6e-89 334.7 656 35.8
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 2.0e-89 334.3 661 35.1
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 2.3e-88 330.9 650 36.0
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.2e-86 325.1 312 54.8
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 6.8e-85 319.3 312 54.5
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.5e-84 318.2 664 34.5
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 3.4e-84 317.0 344 52.6
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 4.4e-84 316.6 377 44.8
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 7.5e-84 315.8 273 59.0
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 9.8e-84 315.5 507 41.8
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 3.2e-82 310.5 821 31.5
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.5e-81 307.0 306 53.3
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 6.0e-81 306.2 688 33.0
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 2.3e-80 304.3 404 44.8
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 8.1e-78 295.8 681 33.2
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 1.3e-75 288.5 386 44.3
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.9e-75 287.3 531 38.4
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 3.7e-75 287.0 312 48.7
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 4.9e-75 286.6 306 50.7
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 4.9e-75 286.6 711 32.3
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 1.1e-74 285.4 833 28.9
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 3.5e-73 280.4 590 34.4
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 1.7e-72 278.1 651 33.5
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 5.6e-71 273.1 681 31.7
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 7.3e-71 272.7 713 30.7
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 7.3e-71 272.7 644 33.2
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 8.1e-70 269.2 319 45.8
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.4e-66 258.5 539 35.8
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 9.2e-66 255.8 374 41.4
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.6e-65 255.0 224 57.1
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 3.5e-65 253.8 642 32.6
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.3e-64 251.9 267 50.9
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 7.3e-63 246.1 312 42.0
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 7.3e-63 246.1 669 28.7
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 4.7e-62 243.4 425 40.2
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 6.2e-62 243.0 310 50.3
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 2.4e-61 241.1 309 43.7
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.9e-59 234.2 578 33.0
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 7.1e-58 229.6 316 44.0
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 8.7e-56 222.6 823 26.6
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 4.0e-53 213.8 270 44.4
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 1.2e-52 212.2 311 43.1
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 7.1e-42 176.4 333 36.9
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.1e-37 162.5 181 50.3
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 2.0e-36 158.3 262 40.8
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 2.0e-36 158.3 122 69.7
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.6e-36 157.9 188 45.7
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.6e-36 157.9 188 45.7
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 3.8e-35 154.1 184 43.5
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 1.0e-32 146.0 229 39.7
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 4.3e-31 140.6 346 32.9
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.8e-30 137.9 134 53.7
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 1.5e-28 132.1 161 42.2
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 2.0e-28 131.7 181 41.4
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 8.4e-27 126.3 180 41.1
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 8.4e-27 126.3 652 25.5
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 1.9e-26 125.2 180 41.1
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 5.5e-26 123.6 202 37.1
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 1.2e-25 122.5 176 40.9
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 2.7e-25 121.3 178 41.0
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 5.1e-24 117.1 167 40.1
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 1.9e-23 115.2 128 48.4
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.3e-23 114.0 121 56.2
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 2.8e-22 111.3 134 46.3
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 3.7e-22 110.9 119 45.4
arahy.Tifrunner.gnm1.ann1.S79H68 Arachis hypogaea HOM05D004076 ORTHO05D004606 7.7e-20 103.2 119 49.6
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 2.9e-19 101.3 121 43.0
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 1.8e-16 92.0 143 44.8
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 2.3e-16 91.7 135 43.0
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.1e-16 90.5 143 44.8
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 1.4e-13 82.4 188 34.0
arahy.Tifrunner.gnm1.ann1.369X3S Arachis hypogaea HOM05D004076 ORTHO05D004606 1.3e-11 75.9 186 33.3
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 1.9e-10 72.0 113 36.3
SEGI_15340 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 8.8e-08 63.2 85 40.0
BcaC07g42098 Brassica carinata HOM05D004076 ORTHO05D004606 5.7e-07 60.5 67 47.8
Medtr2g098740 Medicago truncatula HOM05D004076 ORTHO05D004606 3.7e-06 57.8 63 47.6
SEGI_13457 Sequoiadendron giganteum HOM05D035915 ORTHO05D004606 3.7e-06 57.8 91 37.4


User provided reference genes

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