Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 2.4e-123 445.7 250 100.0
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 1.4e-102 376.7 244 88.1
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 5.1e-89 331.6 252 75.8
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 1.2e-87 327.0 251 75.7
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 1.6e-87 326.6 250 78.0
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 6.2e-87 324.7 251 74.9
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 3.1e-86 322.4 245 77.1
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 6.9e-86 321.2 251 74.1
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 1.4e-83 313.5 252 73.0
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 2.4e-83 312.8 249 74.7
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 6.0e-82 308.1 236 77.5
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 1.9e-80 303.1 269 67.3
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 2.5e-80 302.8 252 71.4
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 3.3e-72 275.8 245 65.3
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 9.6e-72 274.2 251 62.9
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 6.2e-71 271.6 248 63.7
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 6.2e-71 271.6 248 63.7
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 6.2e-71 271.6 248 63.7
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.8e-70 270.0 250 62.4
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 3.1e-70 269.2 248 64.5
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 1.2e-69 267.3 251 61.0
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 2.0e-69 266.5 248 60.1
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.4e-69 265.8 247 61.9
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.4e-69 265.8 247 61.9
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.4e-69 265.8 247 61.9
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 3.4e-69 265.8 244 62.3
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 7.6e-69 264.6 249 61.4
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 1.7e-68 263.5 247 61.1
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.7e-68 263.5 247 62.3
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 2.2e-68 263.1 250 61.2
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 2.9e-68 262.7 244 61.5
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 2.9e-68 262.7 251 61.4
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 2.9e-68 262.7 244 62.7
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 2.9e-68 262.7 245 62.4
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 3.8e-68 262.3 251 61.4
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 4.9e-68 261.9 244 63.5
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 5.5e-67 258.5 248 62.5
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 7.1e-67 258.1 250 60.4
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 9.3e-67 257.7 246 60.2
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 1.2e-66 257.3 248 62.9
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 1.6e-66 256.9 250 61.2
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 2.1e-66 256.5 244 59.8
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 3.5e-66 255.8 243 61.3
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 4.6e-66 255.4 248 61.3
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 6.0e-66 255.0 243 59.3
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 7.9e-66 254.6 244 60.7
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 2.3e-65 253.1 244 60.7
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 2.3e-65 253.1 244 61.1
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 3.0e-65 252.7 244 60.2
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 3.9e-65 252.3 258 57.4
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 3.9e-65 252.3 246 59.3
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 8.7e-65 251.1 236 60.6
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.1e-64 250.8 253 58.1
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 1.5e-64 250.4 252 59.1
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 1.5e-64 250.4 245 61.2
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 1.9e-64 250.0 248 60.9
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 3.3e-64 249.2 246 58.9
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 5.6e-64 248.4 258 58.1
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 2.1e-63 246.5 236 60.6
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 2.8e-63 246.1 246 59.8
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 2.8e-63 246.1 246 59.8
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 3.7e-63 245.7 246 57.7
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 3.7e-63 245.7 256 57.8
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 4.8e-63 245.4 246 59.8
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 4.8e-63 245.4 229 63.3
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 4.8e-63 245.4 251 58.6
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 1.8e-62 243.4 261 57.5
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 1.8e-62 243.4 236 62.7
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 2.4e-62 243.0 255 57.3
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 2.4e-62 243.0 246 57.7
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 6.9e-62 241.5 248 59.3
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 1.2e-61 240.7 235 60.4
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 2.6e-61 239.6 239 60.7
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 5.8e-61 238.4 243 57.6
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 5.8e-61 238.4 242 59.5
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 1.7e-60 236.9 250 56.8
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 2.9e-60 236.1 246 58.5
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 4.2e-59 232.3 246 56.5
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 9.3e-59 231.1 249 57.8
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 9.3e-59 231.1 259 55.2
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 2.1e-58 229.9 246 56.1
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 4.6e-58 228.8 251 56.2
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 1.3e-57 227.3 234 57.3
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 1.5e-56 223.8 233 59.7
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 4.3e-56 222.2 243 55.1
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 5.7e-56 221.9 240 56.7
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 9.0e-54 214.5 244 53.7
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 2.0e-53 213.4 251 52.2
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 8.5e-52 208.0 203 57.1
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.1e-51 207.6 206 57.8
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 5.5e-51 205.3 251 51.4
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 5.5e-51 205.3 251 51.4
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 3.3e-48 196.1 232 54.7
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 5.7e-48 195.3 251 49.8
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 7.4e-48 194.9 251 50.6
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 2.6e-45 186.4 251 50.2
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 1.7e-44 183.7 244 50.8
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 5.0e-44 182.2 248 49.6
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 1.9e-43 180.3 184 56.5
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 1.9e-43 180.3 240 48.8
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 2.7e-42 176.4 164 60.4
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 2.3e-41 173.3 165 59.4
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 7.4e-40 168.3 241 45.6
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 1.7e-39 167.2 259 42.1
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 6.3e-39 165.2 254 46.1
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 1.5e-37 160.6 172 52.9
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 1.7e-36 157.1 243 41.6
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 1.9e-35 153.7 254 42.9
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 4.7e-34 149.1 229 45.4
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.8e-33 147.1 229 44.5
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 2.6e-32 143.3 229 45.0
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.1e-30 137.9 127 63.8
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.7e-28 130.6 195 45.6
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 1.7e-28 130.6 212 45.3
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 1.1e-27 127.9 171 50.3
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 1.9e-27 127.1 171 50.3
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 4.2e-27 125.9 111 65.8
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 8.8e-25 118.2 95 73.7
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 4.4e-24 115.9 174 47.1
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 9.1e-22 108.2 245 36.3
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 5.0e-20 102.4 107 61.7
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 3.2e-19 99.8 253 33.6
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 2.7e-18 96.7 144 48.6
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 4.0e-17 92.8 88 60.2
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 4.4e-16 89.4 60 78.3
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 1.8e-14 84.0 141 39.7
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 4.1e-14 82.8 132 44.7
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 1.1e-11 74.7 68 67.6
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 1.5e-11 74.3 131 38.2
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 2.8e-10 70.1 84 47.6
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 9.8e-08 61.6 69 50.7


User provided reference genes

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