Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr14g0365281 Lupinus albus HOM05D000558 ORTHO05D006060 2.7e-55 218.4 108 100.0
Glyma.19G123600 Glycine max HOM05D000558 ORTHO05D006060 3.3e-29 131.7 96 61.5
Lj1g0006192 Lotus japonicus HOM05D000558 ORTHO05D006060 1.3e-28 129.8 96 58.3
Glyma.03G119300 Glycine max HOM05D000558 ORTHO05D006060 4.8e-28 127.9 96 59.4
Ciclev10012628m.g Citrus clementina HOM05D000558 ORTHO05D006060 4.1e-27 124.8 106 56.6
Haze_20336 Corylus avellana HOM05D000558 ORTHO05D006060 4.1e-27 124.8 95 63.2
CiPaw.10G122600 Carya illinoinensis HOM05D000558 ORTHO05D006060 6.9e-27 124.0 96 61.5
Lalb_Chr14g0365291 Lupinus albus HOM05D000558 ORTHO05D006060 2.6e-26 122.1 96 58.3
Cfa019914 Carpinus fangiana HOM05D000558 ORTHO05D006060 3.4e-26 121.7 106 58.5
CiPaw.09G162700 Carya illinoinensis HOM05D000558 ORTHO05D006060 7.7e-26 120.6 96 60.4
Prupe.7G020600 Prunus persica HOM05D000558 ORTHO05D006060 1.0e-25 120.2 96 58.3
Thecc.05G129900 Theobroma cacao HOM05D000558 ORTHO05D006060 1.0e-25 120.2 96 59.4
CANSAT78G0694 Cannabis sativa HOM05D000558 ORTHO05D006060 2.9e-25 118.6 106 53.8
MD02G1144000 Malus domestica HOM05D000558 ORTHO05D006060 2.9e-25 118.6 96 57.3
VMungo1383G1708 Vigna mungo HOM05D000558 ORTHO05D006060 6.5e-25 117.5 106 52.8
Aqoxy1G00104 Aquilegia oxysepala HOM05D000558 ORTHO05D006060 4.2e-24 114.8 95 55.8
Phvul.001G108800 Phaseolus vulgaris HOM05D000558 ORTHO05D006060 7.2e-24 114.0 106 51.9
Cpa.g.sc92.56 Carica papaya HOM05D000558 ORTHO05D006060 9.4e-24 113.6 106 51.9
Potri.016G024900 Populus trichocarpa HOM05D000558 ORTHO05D006060 9.4e-24 113.6 96 54.2
GSVIVG01025840001 Vitis vinifera HOM05D000558 ORTHO05D006060 1.6e-23 112.8 96 57.3
FvH4_1g24870 Fragaria vesca HOM05D000558 ORTHO05D006060 2.7e-23 112.1 106 52.8
FAN19G1330 Fragaria x ananassa HOM05D000558 ORTHO05D006060 2.7e-23 112.1 106 52.8
Rhsim02G0221000 Rhododendron simsii HOM05D000558 ORTHO05D006060 3.6e-23 111.7 105 52.4
Duzib128G0051 Durio zibethinus HOM05D000558 ORTHO05D006060 4.7e-23 111.3 98 52.0
Medtr7g088310 Medicago truncatula HOM05D000558 ORTHO05D006060 4.7e-23 111.3 91 56.0
Oeu060749.1 Olea europaea HOM05D000558 ORTHO05D006060 4.7e-23 111.3 107 53.3
TPR.G20690 Trifolium pratense HOM05D000558 ORTHO05D006060 4.7e-23 111.3 91 57.1
FAN28G1493 Fragaria x ananassa HOM05D000558 ORTHO05D006060 6.1e-23 110.9 106 51.9
Eucgr.A02176 Eucalyptus grandis HOM05D000558 ORTHO05D006060 7.9e-23 110.5 95 57.9
MD15G1257400 Malus domestica HOM05D000558 ORTHO05D006060 7.9e-23 110.5 106 52.8
RcHm_v2.0_Chr2g0122531 Rosa chinensis HOM05D000558 ORTHO05D006060 7.9e-23 110.5 109 51.4
vmacro11286 Vaccinium macrocarpon HOM05D000558 ORTHO05D006060 1.0e-22 110.2 105 51.4
Nitab4.5_0001918g0070 Nicotiana tabacum HOM05D000558 ORTHO05D006060 1.4e-22 109.8 97 55.7
Nitab4.5_0000721g0170 Nicotiana tabacum HOM05D000558 ORTHO05D006060 1.8e-22 109.4 97 55.7
TAR546G0003 Trochodendron aralioides HOM05D000558 ORTHO05D006060 1.8e-22 109.4 96 54.2
Actinidia06449 Actinidia chinensis HOM05D000558 ORTHO05D006060 2.3e-22 109.0 96 57.3
Manes.09G074219 Manihot esculenta HOM05D000558 ORTHO05D006060 2.3e-22 109.0 103 54.4
Migut.J01566 Erythranthe guttata HOM05D000558 ORTHO05D006060 3.0e-22 108.6 105 50.5
Hma1.2p1_0221F.1_g093060 Hydrangea macrophylla HOM05D000558 ORTHO05D006060 3.0e-22 108.6 96 55.2
Psat3g082760 Pisum sativum HOM05D000558 ORTHO05D006060 3.0e-22 108.6 101 53.5
Dinv11641 Davidia involucrata HOM05D000558 ORTHO05D006060 3.9e-22 108.2 96 53.1
FAN23G1409 Fragaria x ananassa HOM05D000558 ORTHO05D006060 3.9e-22 108.2 106 50.9
Gohir.A04G010500 Gossypium hirsutum HOM05D000558 ORTHO05D006060 3.9e-22 108.2 96 51.0
Gorai.009G445300 Gossypium raimondii HOM05D000558 ORTHO05D006060 3.9e-22 108.2 96 52.1
PGR042G3619 Punica granatum HOM05D000558 ORTHO05D006060 5.1e-22 107.8 104 51.0
Sed0009539 Sechium edule HOM05D000558 ORTHO05D006060 5.1e-22 107.8 93 55.9
Sc13g0000760 Simmondsia chinensis HOM05D000558 ORTHO05D006060 5.1e-22 107.8 91 53.8
Gohir.D05G377500 Gossypium hirsutum HOM05D000558 ORTHO05D006060 6.7e-22 107.5 96 52.1
TWI77G0858 Tripterygium wilfordii HOM05D000558 ORTHO05D006060 6.7e-22 107.5 96 53.1
Sabra16G0030800 Salix brachista HOM05D000558 ORTHO05D006060 8.8e-22 107.1 96 51.0
SHI24500 Sapria himalayana HOM05D000558 ORTHO05D006060 8.8e-22 107.1 93 50.5
Dinv11640 Davidia involucrata HOM05D000558 ORTHO05D006060 1.5e-21 106.3 95 51.6
Lj1A1078G61 Lonicera japonica HOM05D000558 ORTHO05D006060 2.6e-21 105.5 101 50.5
Sc19g0007840 Simmondsia chinensis HOM05D000558 ORTHO05D006060 2.6e-21 105.5 92 53.3
EL10Ac3g07350 Beta vulgaris HOM05D000558 ORTHO05D006060 3.3e-21 105.1 101 53.5
Ca_08343_v3 Cicer arietinum L. HOM05D000558 ORTHO05D006060 3.3e-21 105.1 101 51.5
CSS0006527 Camellia sinensis var. sinensis HOM05D000558 ORTHO05D006060 4.4e-21 104.8 96 54.2
MELO3C009719.2 Cucumis melo HOM05D000558 ORTHO05D006060 4.4e-21 104.8 95 52.6
QL07p015203 Quercus lobata HOM05D000558 ORTHO05D006060 5.7e-21 104.4 96 54.2
Sopen01g025410 Solanum pennellii HOM05D000558 ORTHO05D006060 5.7e-21 104.4 107 49.5
SGA_v2.0_scaffold66G22317 Striga asiatica HOM05D000558 ORTHO05D006060 5.7e-21 104.4 95 51.6
CSS0034662 Camellia sinensis var. sinensis HOM05D000558 ORTHO05D006060 7.4e-21 104.0 96 53.1
CsaV3_3G039780 Cucumis sativus L. HOM05D000558 ORTHO05D006060 9.7e-21 103.6 94 52.1
Peaxi162Scf00168g00310 Petunia axillaris HOM05D000558 ORTHO05D006060 1.3e-20 103.2 103 50.5
AUR62018444 Chenopodium quinoa HOM05D000558 ORTHO05D006060 1.7e-20 102.8 101 51.5
AUR62020989 Chenopodium quinoa HOM05D000558 ORTHO05D006060 2.2e-20 102.4 91 54.9
HanXRQChr10g0291951 Helianthus annuus HOM05D000558 ORTHO05D006060 2.2e-20 102.4 102 48.0
CAN.G245.6 Capsicum annuum HOM05D000558 ORTHO05D006060 2.8e-20 102.1 97 51.5
TPR.G24656 Trifolium pratense HOM05D000558 ORTHO05D006060 2.8e-20 102.1 97 49.5
ClCG10G016560 Citrullus lanatus HOM05D000558 ORTHO05D006060 3.7e-20 101.7 93 54.8
Nn7g37160 Nelumbo nucifera HOM05D000558 ORTHO05D006060 3.7e-20 101.7 91 52.7
PSO339G1095 Papaver somniferum HOM05D000558 ORTHO05D006060 4.8e-20 101.3 106 47.2
MSTRG.10770 Avicennia marina HOM05D000558 ORTHO05D006060 8.2e-20 100.5 105 48.6
Migut.K00175 Erythranthe guttata HOM05D000558 ORTHO05D006060 8.2e-20 100.5 103 50.5
DCAR_020629 Daucus carota HOM05D000558 ORTHO05D006060 1.4e-19 99.8 96 49.0
Aa31LG10G11870 Aethionema arabicum HOM05D000558 ORTHO05D006060 2.4e-19 99.0 107 48.6
Ah.04g150180 Amaranthus hybridus HOM05D000558 ORTHO05D006060 3.1e-19 98.6 101 49.5
Potri.006G027200 Populus trichocarpa HOM05D000558 ORTHO05D006060 3.1e-19 98.6 106 40.6
COL.COLO4_10582 Corchorus olitorius HOM05D000558 ORTHO05D006060 5.3e-19 97.8 81 54.3
CARHR167100 Cardamine hirsuta HOM05D000558 ORTHO05D006060 6.9e-19 97.4 107 48.6
Cc06_g22730 Coffea canephora HOM05D000558 ORTHO05D006060 9.1e-19 97.1 98 55.1
Ah.04g150160 Amaranthus hybridus HOM05D000558 ORTHO05D006060 1.5e-18 96.3 90 52.2
arahy.Tifrunner.gnm1.ann1.B4HFY2 Arachis hypogaea HOM05D000558 ORTHO05D006060 1.5e-18 96.3 97 49.5
Ah.13g077410 Amaranthus hybridus HOM05D000558 ORTHO05D006060 2.6e-18 95.5 101 47.5
AL5G38380 Arabidopsis lyrata HOM05D000558 ORTHO05D006060 2.6e-18 95.5 107 48.6
Hund24508 Selenicereus undatus HOM05D000558 ORTHO05D006060 2.6e-18 95.5 96 51.0
Lsat_1_v5_gn_9_30301 Lactuca sativa HOM05D000558 ORTHO05D006060 3.4e-18 95.1 97 47.4
arahy.Tifrunner.gnm1.ann1.MFRM64 Arachis hypogaea HOM05D000558 ORTHO05D006060 4.5e-18 94.7 97 48.5
Psat3g082800 Pisum sativum HOM05D000558 ORTHO05D006060 4.5e-18 94.7 102 48.0
CDE02G1115 Ceratophyllum demersum HOM05D000558 ORTHO05D006060 1.0e-17 93.6 96 45.8
Nn7g37156 Nelumbo nucifera HOM05D000558 ORTHO05D006060 1.0e-17 93.6 109 44.0
C06p23880 Brassica napus HOM05D000558 ORTHO05D006060 2.2e-17 92.4 107 43.9
Thhalv10006214m.g Eutrema salsugineum HOM05D000558 ORTHO05D006060 2.9e-17 92.0 107 43.9
A07p23160 Brassica napus HOM05D000558 ORTHO05D006060 3.8e-17 91.7 107 43.9
BraA07t29977Z Brassica rapa HOM05D000558 ORTHO05D006060 3.8e-17 91.7 107 43.9
MBI13_g30270_MAGBIO Magnolia biondii HOM05D000558 ORTHO05D006060 3.8e-17 91.7 91 49.5
BcaC08g44812 Brassica carinata HOM05D000558 ORTHO05D006060 5.0e-17 91.3 107 43.9
BolC6t37556H Brassica oleracea HOM05D000558 ORTHO05D006060 5.0e-17 91.3 107 43.9
BcaB02g07633 Brassica carinata HOM05D000558 ORTHO05D006060 6.5e-17 90.9 107 43.9
BcaB02g08341 Brassica carinata HOM05D000558 ORTHO05D006060 8.5e-17 90.5 97 46.4
AT3G56950 Arabidopsis thaliana HOM05D000558 ORTHO05D006060 1.1e-16 90.1 107 44.9
MBI19_g17998_MAGBIO Magnolia biondii HOM05D000558 ORTHO05D006060 1.1e-16 90.1 81 51.9
BcaC07g40104 Brassica carinata HOM05D000558 ORTHO05D006060 1.4e-16 89.7 97 46.4
Sp5g05640 Schrenkiella parvula HOM05D000558 ORTHO05D006060 1.9e-16 89.4 107 43.0
Carub.0005s2369 Capsella rubella HOM05D000558 ORTHO05D006060 2.5e-16 89.0 97 45.4
BcaC02g09880 Brassica carinata HOM05D000558 ORTHO05D006060 3.2e-16 88.6 97 45.4
A04p03630 Brassica napus HOM05D000558 ORTHO05D006060 3.2e-16 88.6 97 45.4
C04p35610 Brassica napus HOM05D000558 ORTHO05D006060 3.2e-16 88.6 97 45.4
BolC4t25243H Brassica oleracea HOM05D000558 ORTHO05D006060 3.2e-16 88.6 97 45.4
BraA04t16072Z Brassica rapa HOM05D000558 ORTHO05D006060 3.2e-16 88.6 97 45.4
DCAR_016943 Daucus carota HOM05D000558 ORTHO05D006060 1.6e-15 86.3 85 47.1
HanXRQChr04g0125531 Helianthus annuus HOM05D000558 ORTHO05D006060 2.1e-15 85.9 106 42.5
THA.LOC104824385 Tarenaya hassleriana HOM05D000558 ORTHO05D006060 2.7e-15 85.5 96 40.6
BolC8t50837H Brassica oleracea HOM05D000558 ORTHO05D006060 4.7e-15 84.7 97 44.3
ATR1096G141 Amborella trichopoda HOM05D000558 ORTHO05D006060 8.0e-15 84.0 101 45.5
A09p49820 Brassica napus HOM05D000558 ORTHO05D006060 1.0e-14 83.6 107 43.9
BraA09t40435Z Brassica rapa HOM05D000558 ORTHO05D006060 1.0e-14 83.6 107 43.9
HPP92_014342 Vanilla planifolia HOM05D000558 ORTHO05D006060 1.4e-14 83.2 96 43.8
Cc08_g05530 Coffea canephora HOM05D000558 ORTHO05D006060 1.8e-14 82.8 97 47.4
THA.LOC104814769 Tarenaya hassleriana HOM05D000558 ORTHO05D006060 2.3e-14 82.4 108 40.7
HPP92_006507 Vanilla planifolia HOM05D000558 ORTHO05D006060 3.9e-14 81.6 92 43.5
Lsat_1_v5_gn_8_83721 Lactuca sativa HOM05D000558 ORTHO05D006060 1.5e-13 79.7 96 40.6
unitig_899.g15653 Utricularia gibba HOM05D000558 ORTHO05D006060 1.5e-13 79.7 78 55.1
Nn7g37155 Nelumbo nucifera HOM05D000558 ORTHO05D006060 3.3e-13 78.6 97 40.2
HanXRQChr06g0178141 Helianthus annuus HOM05D000558 ORTHO05D006060 5.7e-13 77.8 106 41.5
Duzib093G0609 Durio zibethinus HOM05D000558 ORTHO05D006060 4.8e-12 74.7 73 47.9
Solyc01g056720.4 Solanum lycopersicum HOM05D000558 ORTHO05D006060 6.3e-12 74.3 109 40.4
C08p32220 Brassica napus HOM05D000558 ORTHO05D006060 1.1e-11 73.6 75 49.3
Nn7g37157 Nelumbo nucifera HOM05D000558 ORTHO05D006060 1.1e-11 73.6 96 37.5
Psat0s2987g0040 Pisum sativum HOM05D000558 ORTHO05D006060 1.4e-11 73.2 65 49.2
Os03g0320000 Oryza sativa ssp. japonica HOM05D000558 ORTHO05D006060 2.6e-10 68.9 96 39.6
Zm00001eb015230 Zea mays HOM05D000558 ORTHO05D006060 2.2e-09 65.9 96 37.5
BcaC07g40008 Brassica carinata HOM05D000558 ORTHO05D006060 8.5e-09 63.9 97 38.1
Atru.chr1.1540 Acer truncatum HOM05D000558 ORTHO05D006060 4.7e-07 58.2 40 65.0
FAN26G2707 Fragaria x ananassa HOM05D000558 ORTHO05D006060 4.0e-06 55.1 55 45.5
SEGI_10661 Sequoiadendron giganteum HOM05D000558 ORTHO05D006060 5.2e-06 54.7 106 30.2
SEGI_31063 Sequoiadendron giganteum HOM05D000558 ORTHO05D006060 5.2e-06 54.7 106 30.2


User provided reference genes

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