Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 1.6e-233 812.4 402 100.0
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 4.4e-228 794.3 402 97.5
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 2.9e-219 765.0 402 93.0
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 3.2e-218 761.5 402 92.5
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 3.2e-218 761.5 402 91.8
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 4.2e-218 761.1 402 91.0
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.2e-217 759.6 402 92.3
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 92.0
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 92.0
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 92.0
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 3.5e-217 758.1 402 91.8
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 3.5e-217 758.1 402 91.8
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 4.6e-217 757.7 402 91.8
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 6.0e-217 757.3 402 91.5
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 92.0
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 92.0
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 1.0e-216 756.5 402 91.3
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 91.5
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 91.8
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.3e-216 755.4 402 91.5
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 2.3e-216 755.4 402 91.3
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 3.0e-216 755.0 402 91.3
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 3.0e-216 755.0 402 91.3
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 3.9e-216 754.6 402 90.0
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 3.9e-216 754.6 402 90.5
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 91.8
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 90.8
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 91.8
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 91.5
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 91.5
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 91.3
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 91.3
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 8.7e-216 753.4 402 91.0
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 91.5
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 91.3
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 90.3
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 90.8
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 90.8
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 4.3e-215 751.1 402 90.5
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 4.3e-215 751.1 402 91.0
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 90.8
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 91.0
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 90.5
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 90.8
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 90.8
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 90.8
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 91.0
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 90.3
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 2.1e-214 748.8 402 90.5
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 2.8e-214 748.4 401 89.8
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 3.6e-214 748.0 402 89.6
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 3.6e-214 748.0 402 91.0
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 6.2e-214 747.3 402 90.3
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 8.1e-214 746.9 402 90.0
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 8.1e-214 746.9 402 90.0
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 90.0
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 90.0
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 90.0
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.4e-213 746.1 402 90.5
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 1.4e-213 746.1 402 88.8
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 1.4e-213 746.1 402 89.8
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 90.5
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 90.3
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 90.0
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 90.0
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 90.0
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 5.3e-213 744.2 402 89.6
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 9.0e-213 743.4 411 88.6
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 1.5e-212 742.7 402 89.8
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 7.6e-212 740.3 416 88.2
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 90.0
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 89.6
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 2.2e-211 738.8 402 89.3
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 2.2e-211 738.8 416 88.0
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 2.2e-211 738.8 402 88.6
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 3.8e-211 738.0 417 86.6
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 3.8e-211 738.0 402 88.6
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 4.9e-211 737.6 402 89.3
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 4.9e-211 737.6 402 88.8
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 6.4e-211 737.3 396 89.9
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 8.4e-211 736.9 402 89.3
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 1.1e-210 736.5 402 87.8
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 2.4e-210 735.3 402 88.8
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 1.6e-209 732.6 401 88.3
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 3.5e-209 731.5 402 87.6
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 4.6e-209 731.1 402 87.3
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 4.6e-209 731.1 402 88.3
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 4.6e-209 731.1 402 88.3
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 7.9e-209 730.3 402 88.6
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 1.0e-208 729.9 402 88.6
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 1.0e-208 729.9 402 88.6
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 1.0e-208 729.9 402 88.6
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 1.3e-208 729.6 402 88.6
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 1.3e-208 729.6 402 88.6
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.8e-208 729.2 438 83.1
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 2.3e-208 728.8 402 88.3
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 2.3e-208 728.8 402 86.6
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 3.9e-208 728.0 402 88.1
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 3.9e-208 728.0 402 88.1
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 3.9e-208 728.0 402 88.3
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 3.9e-208 728.0 429 84.4
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 1.1e-207 726.5 402 87.8
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 1.1e-207 726.5 402 87.8
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 1.1e-207 726.5 402 87.8
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 5.6e-207 724.2 402 88.8
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 5.6e-207 724.2 402 87.1
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 7.4e-207 723.8 402 87.1
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 7.4e-207 723.8 402 86.8
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 7.4e-207 723.8 402 87.1
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.3e-206 723.0 402 87.1
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 1.4e-205 719.5 402 86.1
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 9.0e-205 716.8 419 85.7
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 4.5e-204 714.5 402 86.8
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 1.4e-202 709.5 441 80.0
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 9.3e-202 706.8 402 85.6
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 7.9e-201 703.7 400 84.2
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 1.5e-199 699.5 402 82.6
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 1.5e-199 699.5 402 83.8
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 3.1e-197 691.8 402 83.6
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 4.5e-196 688.0 402 84.6
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 1.9e-194 682.6 375 87.7
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 2.7e-193 678.7 402 80.8
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 1.0e-192 676.8 402 81.8
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 5.1e-192 674.5 402 81.3
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 6.7e-192 674.1 360 89.7
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 6.7e-192 674.1 402 83.6
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 1.3e-190 669.8 357 89.9
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 2.9e-187 658.7 361 89.5
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 6.9e-181 637.5 401 75.1
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 3.4e-180 635.2 402 78.9
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.6e-177 626.3 334 91.3
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 6.1e-177 624.4 402 73.6
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 5.1e-176 621.3 340 89.4
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 5.1e-176 621.3 402 74.1
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 3.7e-174 615.1 402 72.6
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 7.0e-173 610.9 403 72.2
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 9.1e-173 610.5 403 72.5
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 1.6e-172 609.8 402 77.6
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 2.0e-167 592.8 402 70.4
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 4.4e-167 591.7 401 69.6
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 3.4e-159 565.5 403 67.2
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 1.8e-149 533.1 289 88.2
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 5.6e-146 521.5 403 68.7
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 1.7e-142 510.0 402 67.2
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 1.8e-141 506.5 419 64.4
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 8.9e-128 461.1 259 85.3
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 4.7e-121 438.7 394 54.3
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.4e-117 427.2 395 55.2
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 8.6e-115 417.9 276 76.4
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 4.5e-103 379.0 229 81.2
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 3.5e-100 369.4 219 84.0
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 1.3e-99 367.5 219 83.1
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 3.0e-99 366.3 219 82.2
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.3e-83 313.5 300 54.0
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.2e-79 301.2 163 89.6
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.1e-77 294.7 160 87.5
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 4.1e-56 223.0 116 92.2
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 6.3e-33 146.0 86 81.4
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 3.1e-32 143.7 351 29.6
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 2.0e-31 141.0 351 27.9
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.2e-17 94.4 47 91.5
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 8.6e-14 82.4 45 77.8
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 2.8e-12 77.4 72 56.9
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 5.8e-10 69.7 316 23.1
Pp3s34_170 Physcomitrium patens HOM05D000068 ORTHO05D011688 3.9e-06 57.0 353 20.4


User provided reference genes

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