Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr14g0361811 Lupinus albus HOM05D000079 ORTHO05D009764 1.0e-159 566.6 274 100.0
Glyma.17G217200 Glycine max HOM05D000079 ORTHO05D009764 1.2e-86 323.9 331 53.8
Glyma.14G110500 Glycine max HOM05D000079 ORTHO05D009764 5.7e-86 321.6 330 54.2
Phvul.001G046200 Phaseolus vulgaris HOM05D000079 ORTHO05D009764 4.1e-84 315.5 330 52.7
VMungo0647G0784 Vigna mungo HOM05D000079 ORTHO05D009764 3.0e-82 309.3 333 52.0
arahy.Tifrunner.gnm1.ann1.5TM68G Arachis hypogaea HOM05D000079 ORTHO05D009764 7.8e-75 284.6 340 50.9
arahy.Tifrunner.gnm1.ann1.E4PME3 Arachis hypogaea HOM05D000079 ORTHO05D009764 2.5e-73 279.6 340 50.6
Thecc.09G017500 Theobroma cacao HOM05D000079 ORTHO05D009764 8.4e-61 238.0 334 42.5
Gorai.009G061100 Gossypium raimondii HOM05D000079 ORTHO05D009764 4.1e-60 235.7 333 43.2
Gorai.010G244000 Gossypium raimondii HOM05D000079 ORTHO05D009764 1.6e-59 233.8 330 42.7
Gohir.A13G179900 Gossypium hirsutum HOM05D000079 ORTHO05D009764 2.1e-59 233.4 330 42.1
Gohir.A05G058000 Gossypium hirsutum HOM05D000079 ORTHO05D009764 2.7e-59 233.0 333 42.9
Manes.16G127600 Manihot esculenta HOM05D000079 ORTHO05D009764 2.7e-59 233.0 331 43.2
Gohir.D13G188000 Gossypium hirsutum HOM05D000079 ORTHO05D009764 3.5e-59 232.6 330 42.4
QL02p019747 Quercus lobata HOM05D000079 ORTHO05D009764 3.5e-59 232.6 328 41.8
Gohir.D05G060000 Gossypium hirsutum HOM05D000079 ORTHO05D009764 7.8e-59 231.5 333 43.5
Duzib168G1220 Durio zibethinus HOM05D000079 ORTHO05D009764 1.7e-58 230.3 333 42.0
Cfa013080 Carpinus fangiana HOM05D000079 ORTHO05D009764 2.3e-58 229.9 328 42.4
Haze_21437 Corylus avellana HOM05D000079 ORTHO05D009764 8.6e-58 228.0 329 43.2
COL.COLO4_18935 Corchorus olitorius HOM05D000079 ORTHO05D009764 1.1e-57 227.6 335 40.6
Ah.10g035580 Amaranthus hybridus HOM05D000079 ORTHO05D009764 1.5e-57 227.3 297 44.8
Ciclev10010432m.g Citrus clementina HOM05D000079 ORTHO05D009764 2.5e-57 226.5 331 41.7
Hma1.2p1_1523F.1_g288790 Hydrangea macrophylla HOM05D000079 ORTHO05D009764 4.3e-57 225.7 329 43.5
Atru.chr7.2522 Acer truncatum HOM05D000079 ORTHO05D009764 1.1e-55 221.1 344 41.3
TWI63G0198 Tripterygium wilfordii HOM05D000079 ORTHO05D009764 3.1e-55 219.5 350 40.9
Cpa.g.sc127.12 Carica papaya HOM05D000079 ORTHO05D009764 9.9e-54 214.5 335 41.2
PGR044G2260 Punica granatum HOM05D000079 ORTHO05D009764 8.4e-53 211.5 327 39.1
CSS0027093 Camellia sinensis var. sinensis HOM05D000079 ORTHO05D009764 9.3e-52 208.0 335 40.6
TAR625G0359 Trochodendron aralioides HOM05D000079 ORTHO05D009764 1.2e-51 207.6 336 38.7
Prupe.1G391500 Prunus persica HOM05D000079 ORTHO05D009764 1.6e-51 207.2 333 39.3
MD15G1037500 Malus domestica HOM05D000079 ORTHO05D009764 4.6e-51 205.7 338 37.9
CSS0028334 Camellia sinensis var. sinensis HOM05D000079 ORTHO05D009764 1.0e-50 204.5 335 40.3
AUR62012462 Chenopodium quinoa HOM05D000079 ORTHO05D009764 1.0e-50 204.5 335 39.1
GSVIVG01035902001 Vitis vinifera HOM05D000079 ORTHO05D009764 2.3e-50 203.4 330 37.9
Hund03465 Selenicereus undatus HOM05D000079 ORTHO05D009764 3.9e-50 202.6 330 38.2
MD08G1058900 Malus domestica HOM05D000079 ORTHO05D009764 2.5e-49 199.9 336 39.0
Nn8g39796 Nelumbo nucifera HOM05D000079 ORTHO05D009764 2.5e-49 199.9 334 38.6
Eucgr.J02627 Eucalyptus grandis HOM05D000079 ORTHO05D009764 1.3e-48 197.6 330 38.5
RcHm_v2.0_Chr6g0299671 Rosa chinensis HOM05D000079 ORTHO05D009764 2.1e-48 196.8 345 38.0
Eucgr.C02715 Eucalyptus grandis HOM05D000079 ORTHO05D009764 2.8e-48 196.4 330 38.5
FAN15G0290 Fragaria x ananassa HOM05D000079 ORTHO05D009764 6.2e-48 195.3 347 38.0
Sed0006294 Sechium edule HOM05D000079 ORTHO05D009764 6.2e-48 195.3 332 38.6
EL10Ac2g04135 Beta vulgaris HOM05D000079 ORTHO05D009764 1.1e-47 194.5 336 39.3
FAN27G1993 Fragaria x ananassa HOM05D000079 ORTHO05D009764 1.4e-47 194.1 354 37.0
CiPaw.07G228500 Carya illinoinensis HOM05D000079 ORTHO05D009764 3.1e-47 193.0 298 41.6
CsaV3_4G036710 Cucumis sativus L. HOM05D000079 ORTHO05D009764 1.5e-46 190.7 325 36.0
MELO3C016974.2 Cucumis melo HOM05D000079 ORTHO05D009764 1.3e-45 187.6 326 35.6
ClCG05G016470 Citrullus lanatus HOM05D000079 ORTHO05D009764 1.7e-45 187.2 336 35.7
AUR62031586 Chenopodium quinoa HOM05D000079 ORTHO05D009764 2.4e-44 183.3 306 37.6
CARHR239830 Cardamine hirsuta HOM05D000079 ORTHO05D009764 3.2e-44 183.0 339 36.6
THA.LOC104803636 Tarenaya hassleriana HOM05D000079 ORTHO05D009764 2.7e-43 179.9 354 35.0
Sp7g29730 Schrenkiella parvula HOM05D000079 ORTHO05D009764 3.5e-43 179.5 337 35.9
AL7G19980 Arabidopsis lyrata HOM05D000079 ORTHO05D009764 2.3e-42 176.8 339 35.7
Carub.0007s0863 Capsella rubella HOM05D000079 ORTHO05D009764 3.0e-42 176.4 343 36.4
AT4G31910 Arabidopsis thaliana HOM05D000079 ORTHO05D009764 6.7e-42 175.3 339 35.1
A03p61130 Brassica napus HOM05D000079 ORTHO05D009764 1.5e-41 174.1 338 36.4
BraA03t15151Z Brassica rapa HOM05D000079 ORTHO05D009764 1.5e-41 174.1 338 36.4
Aa31LG2G18190 Aethionema arabicum HOM05D000079 ORTHO05D009764 2.5e-41 173.3 328 36.0
C07p58990 Brassica napus HOM05D000079 ORTHO05D009764 4.3e-41 172.6 338 36.7
BolC7t46346H Brassica oleracea HOM05D000079 ORTHO05D009764 7.4e-41 171.8 338 36.7
Thhalv10025159m.g Eutrema salsugineum HOM05D000079 ORTHO05D009764 1.6e-40 170.6 337 34.7
Migut.E01828 Erythranthe guttata HOM05D000079 ORTHO05D009764 2.1e-40 170.2 336 35.1
FvH4_2g40900 Fragaria vesca HOM05D000079 ORTHO05D009764 4.0e-39 166.0 345 34.2
Actinidia14117 Actinidia chinensis HOM05D000079 ORTHO05D009764 1.7e-37 160.6 290 36.9
SEGI_28469 Sequoiadendron giganteum HOM05D000079 ORTHO05D009764 2.2e-37 160.2 334 33.2
FAN20G1311 Fragaria x ananassa HOM05D000079 ORTHO05D009764 1.4e-36 157.5 343 33.5
ATR1153G025 Amborella trichopoda HOM05D000079 ORTHO05D009764 6.9e-31 138.7 338 31.4
CDE05G2468 Ceratophyllum demersum HOM05D000079 ORTHO05D009764 2.6e-30 136.7 306 33.7
Thecc.02G306200 Theobroma cacao HOM05D000079 ORTHO05D009764 5.7e-25 119.0 338 29.0
Dinv16473 Davidia involucrata HOM05D000079 ORTHO05D009764 9.7e-25 118.2 100 58.0
Dinv14381 Davidia involucrata HOM05D000079 ORTHO05D009764 3.4e-22 109.8 334 26.9
Atru.chr11.787 Acer truncatum HOM05D000079 ORTHO05D009764 5.9e-22 109.0 324 29.0
Nn4g24486 Nelumbo nucifera HOM05D000079 ORTHO05D009764 2.9e-21 106.7 333 26.7
Lj7C730G10 Lonicera japonica HOM05D000079 ORTHO05D009764 6.5e-21 105.5 105 51.4
TAR371G0363 Trochodendron aralioides HOM05D000079 ORTHO05D009764 5.5e-20 102.4 334 26.9
QL03p038558 Quercus lobata HOM05D000079 ORTHO05D009764 2.3e-18 97.1 334 26.3
Cfa015057 Carpinus fangiana HOM05D000079 ORTHO05D009764 3.0e-18 96.7 335 25.1
Haze_10833 Corylus avellana HOM05D000079 ORTHO05D009764 1.2e-14 84.7 338 24.0
SMO367G0352 Selaginella moellendorffii HOM05D000079 ORTHO05D009764 1.0e-13 81.6 335 24.5
Hma1.2p1_0230F.1_g097220 Hydrangea macrophylla HOM05D000079 ORTHO05D009764 5.0e-13 79.3 55 65.5
Aqoxy1G02391 Aquilegia oxysepala HOM05D000079 ORTHO05D000211 2.5e-12 77.0 297 25.3
COL.COLO4_05053 Corchorus olitorius HOM05D000079 ORTHO05D009764 2.5e-12 77.0 104 40.4
ATR0021G021 Amborella trichopoda HOM05D000079 ORTHO05D009764 3.6e-11 73.2 100 36.0
Mapoly0133s0035 Marchantia polymorpha HOM05D000079 ORTHO05D002610 3.0e-10 70.1 298 23.5
Mapoly0002s0087 Marchantia polymorpha HOM05D000079 ORTHO05D002610 6.7e-10 68.9 323 23.5
CANSAT56G3749 Cannabis sativa HOM05D000079 ORTHO05D000211 8.8e-10 68.6 316 23.7
SEGI_02994 Sequoiadendron giganteum HOM05D000079 ORTHO05D002610 4.4e-09 66.2 297 23.2
ECA234G2053 Erigeron canadensis HOM05D000079 ORTHO05D000211 7.4e-09 65.5 278 24.1
COL.COLO4_28792 Corchorus olitorius HOM05D000079 ORTHO05D000211 1.3e-08 64.7 304 21.7
Ca_08245_v3 Cicer arietinum L. HOM05D000079 ORTHO05D002610 1.7e-08 64.3 301 23.6
Migut.J01381 Erythranthe guttata HOM05D000079 ORTHO05D000211 1.7e-08 64.3 314 22.3
Medtr8g096530 Medicago truncatula HOM05D000079 ORTHO05D000211 2.2e-08 63.9 275 24.4
Gohir.A10G147300 Gossypium hirsutum HOM05D000079 ORTHO05D000211 2.8e-08 63.5 163 27.6
MSTRG.4662 Avicennia marina HOM05D000079 ORTHO05D000211 4.8e-08 62.8 298 22.1
TPR.G12977 Trifolium pratense HOM05D000079 ORTHO05D000211 4.8e-08 62.8 269 23.8
Oeu024890.1 Olea europaea HOM05D000079 ORTHO05D000211 6.3e-08 62.4 313 22.4
FvH4_6g53880 Fragaria vesca HOM05D000079 ORTHO05D000211 8.2e-08 62.0 322 21.1
Phvul.004G062600 Phaseolus vulgaris HOM05D000079 ORTHO05D002610 8.2e-08 62.0 305 24.3
MBI07_g24744_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D000211 1.1e-07 61.6 266 24.1
Phvul.001G112400 Phaseolus vulgaris HOM05D000079 ORTHO05D000211 1.1e-07 61.6 256 25.0
FAN09G0876 Fragaria x ananassa HOM05D000173 ORTHO05D006747 1.4e-07 61.2 322 20.8
CSS0024220 Camellia sinensis var. sinensis HOM05D000079 ORTHO05D000211 1.8e-07 60.8 296 22.6
Gohir.D10G118900 Gossypium hirsutum HOM05D000079 ORTHO05D000211 1.8e-07 60.8 163 27.0
Gorai.011G130700 Gossypium raimondii HOM05D000079 ORTHO05D000211 1.8e-07 60.8 163 27.0
Lj1g0001343 Lotus japonicus HOM05D000079 ORTHO05D002610 1.8e-07 60.8 308 25.0
Nitab4.5_0000176g0020 Nicotiana tabacum HOM05D000079 ORTHO05D009750 2.4e-07 60.5 197 29.4
FAN05G0826 Fragaria x ananassa HOM05D000173 ORTHO05D006747 3.1e-07 60.1 325 21.2
Gohir.A10G147800 Gossypium hirsutum HOM05D000079 ORTHO05D000211 4.1e-07 59.7 162 26.5
Manes.14G048500 Manihot esculenta HOM05D000079 ORTHO05D000211 4.1e-07 59.7 264 23.9
Glyma.19G107700 Glycine max HOM05D000079 ORTHO05D002610 5.3e-07 59.3 303 25.7
Hma1.2p1_0493F.1_g164840 Hydrangea macrophylla HOM05D000079 ORTHO05D000211 5.3e-07 59.3 293 24.2
Manes.06G034601 Manihot esculenta HOM05D000079 ORTHO05D000211 5.3e-07 59.3 308 24.7
Mapoly0005s0261 Marchantia polymorpha HOM05D000079 ORTHO05D000211 5.3e-07 59.3 261 23.8
Pp3c16_22890 Physcomitrium patens HOM05D000079 ORTHO05D002610 5.3e-07 59.3 111 30.6
CANSAT78G0893 Cannabis sativa HOM05D000079 ORTHO05D009764 6.9e-07 58.9 73 38.4
CDE02G2099 Ceratophyllum demersum HOM05D000079 ORTHO05D000211 6.9e-07 58.9 299 21.4
CDE03G0046 Ceratophyllum demersum HOM05D000079 ORTHO05D003772 6.9e-07 58.9 162 27.2
RcHm_v2.0_Chr2g0176041 Rosa chinensis HOM05D000079 ORTHO05D000211 6.9e-07 58.9 322 20.8
TWI23G0854 Tripterygium wilfordii HOM05D000079 ORTHO05D000211 6.9e-07 58.9 271 22.5
CANSAT01G2282 Cannabis sativa HOM05D000079 ORTHO05D000211 9.1e-07 58.5 167 27.5
Gohir.D10G120400 Gossypium hirsutum HOM05D000079 ORTHO05D000211 9.1e-07 58.5 168 26.2
Lj5C93T6 Lonicera japonica HOM05D000079 ORTHO05D000211 9.1e-07 58.5 267 24.7
SEGI_24639 Sequoiadendron giganteum HOM05D000079 ORTHO05D386422 9.1e-07 58.5 50 54.0
Gohir.D10G119700 Gossypium hirsutum HOM05D000079 ORTHO05D000211 1.2e-06 58.2 168 26.2
Gorai.011G131500 Gossypium raimondii HOM05D000079 ORTHO05D000211 1.2e-06 58.2 168 26.2
Gorai.011G132100 Gossypium raimondii HOM05D000079 ORTHO05D000211 1.2e-06 58.2 168 26.2
TWI39G0391 Tripterygium wilfordii HOM05D000079 ORTHO05D000211 1.2e-06 58.2 265 21.5
vmacro23284 Vaccinium macrocarpon HOM05D000079 ORTHO05D000211 1.2e-06 58.2 287 23.0
EL10Ac3g07055 Beta vulgaris HOM05D000079 ORTHO05D000211 1.5e-06 57.8 163 30.1
COL.COLO4_28794 Corchorus olitorius HOM05D000079 ORTHO05D000211 1.5e-06 57.8 279 21.5
Haze_21969 Corylus avellana HOM05D000079 ORTHO05D000211 2.0e-06 57.4 267 21.3
ECA240G3580 Erigeron canadensis HOM05D000148 ORTHO05D000081 2.0e-06 57.4 272 23.9
MBI16_g09917_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D000211 2.0e-06 57.4 289 21.8
VMungo0464G2152 Vigna mungo HOM05D000079 ORTHO05D002610 2.0e-06 57.4 304 24.0
CANSAT80G1856 Cannabis sativa HOM05D000079 ORTHO05D000211 2.6e-06 57.0 269 21.6
DCAR_021643 Daucus carota HOM05D000079 ORTHO05D000211 2.6e-06 57.0 266 23.3
Rhsim01G0026200 Rhododendron simsii HOM05D000079 ORTHO05D000211 2.6e-06 57.0 170 27.6
SHI11302 Sapria himalayana HOM05D000079 ORTHO05D000211 2.6e-06 57.0 267 21.0
Sed0006340 Sechium edule HOM05D000079 ORTHO05D000211 2.6e-06 57.0 300 22.7
EL10Ac3g07053 Beta vulgaris HOM05D000079 ORTHO05D000211 3.4e-06 56.6 163 29.4
Manes.06G033850 Manihot esculenta HOM05D000079 ORTHO05D000211 3.4e-06 56.6 308 24.4
Manes.06G034800 Manihot esculenta HOM05D000079 ORTHO05D000211 3.4e-06 56.6 305 22.0
PSO210G6111 Papaver somniferum HOM05D000079 ORTHO05D000211 3.4e-06 56.6 293 22.9
Psat3g173880 Pisum sativum HOM05D000079 ORTHO05D000211 3.4e-06 56.6 269 23.0
SMO146G0221 Selaginella moellendorffii HOM05D000079 ORTHO05D000211 3.4e-06 56.6 295 22.7
Cpa.g.sc989.1 Carica papaya HOM05D000079 ORTHO05D000211 4.5e-06 56.2 298 22.8
CDE05G1785 Ceratophyllum demersum HOM05D000079 ORTHO05D000211 4.5e-06 56.2 304 21.4
PGR031G1553 Punica granatum HOM05D000079 ORTHO05D006933 4.5e-06 56.2 263 24.0
Actinidia32695 Actinidia chinensis HOM05D000079 ORTHO05D009750 5.9e-06 55.8 221 25.8
MSTRG.4665 Avicennia marina HOM05D000079 ORTHO05D000211 5.9e-06 55.8 164 25.6
COL.COLO4_18828 Corchorus olitorius HOM05D000079 ORTHO05D000211 5.9e-06 55.8 279 21.9
Eucgr.A01026 Eucalyptus grandis HOM05D000079 ORTHO05D000211 5.9e-06 55.8 48 52.1
Lsat_1_v5_gn_4_82580 Lactuca sativa HOM05D000079 ORTHO05D000211 5.9e-06 55.8 301 23.9
Oeu021332.1 Olea europaea HOM05D000079 ORTHO05D000211 5.9e-06 55.8 169 27.2
Rhsim01G0026800 Rhododendron simsii HOM05D000079 ORTHO05D000211 5.9e-06 55.8 174 27.0
SalBow2G2028 Salvia bowleyana HOM05D000079 ORTHO05D000211 5.9e-06 55.8 262 24.0
SalBow5G0397 Salvia bowleyana HOM05D000079 ORTHO05D000211 5.9e-06 55.8 262 24.0
Thecc.04G160900 Theobroma cacao HOM05D000079 ORTHO05D000211 5.9e-06 55.8 283 23.0
CSS0004436 Camellia sinensis var. sinensis HOM05D000079 ORTHO05D000211 7.7e-06 55.5 67 41.8
Glyma.19G096100 Glycine max HOM05D000079 ORTHO05D000211 7.7e-06 55.5 268 24.3
Gohir.D06G200200 Gossypium hirsutum HOM05D000079 ORTHO05D000211 7.7e-06 55.5 276 21.0


User provided reference genes

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