Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 2.1e-49 198.7 102 100.0
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 3.0e-32 141.7 105 68.6
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 6.8e-32 140.6 105 68.6
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 1.5e-31 139.4 98 71.4
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 2.6e-31 138.7 101 67.3
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 3.4e-31 138.3 98 67.3
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 3.4e-31 138.3 103 70.9
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 3.4e-31 138.3 102 66.7
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 5.7e-31 137.5 105 67.6
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 9.8e-31 136.7 97 69.1
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 1.3e-30 136.3 108 65.7
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 2.8e-30 135.2 98 67.3
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 6.3e-30 134.0 98 64.3
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 6.3e-30 134.0 105 63.8
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 8.3e-30 133.7 98 67.3
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 1.1e-29 133.3 100 67.0
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 1.4e-29 132.9 96 67.7
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.4e-29 132.9 100 66.0
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 1.4e-29 132.9 100 66.0
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.8e-29 132.5 99 65.7
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 2.4e-29 132.1 97 67.0
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 2.4e-29 132.1 98 66.3
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 4.1e-29 131.3 97 67.0
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 5.4e-29 131.0 96 67.7
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 5.4e-29 131.0 96 67.7
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 5.4e-29 131.0 96 67.7
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 5.4e-29 131.0 96 67.7
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 9.1e-29 130.2 97 66.0
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 9.1e-29 130.2 98 66.3
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 1.2e-28 129.8 99 64.6
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 1.6e-28 129.4 96 65.6
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 1.6e-28 129.4 96 65.6
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 1.6e-28 129.4 96 65.6
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 1.6e-28 129.4 96 65.6
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.6e-28 129.4 98 66.3
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 2.7e-28 128.6 97 63.9
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 3.5e-28 128.3 100 65.0
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 3.5e-28 128.3 97 61.9
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 4.5e-28 127.9 98 63.3
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 4.5e-28 127.9 96 64.6
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 4.5e-28 127.9 96 64.6
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 5.9e-28 127.5 96 65.6
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 1.3e-27 126.3 98 64.3
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 3.8e-27 124.8 98 65.3
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 5.0e-27 124.4 97 63.9
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 5.0e-27 124.4 95 64.2
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 6.5e-27 124.0 95 64.2
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 8.6e-27 123.6 98 61.2
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 1.1e-26 123.2 95 64.2
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 1.1e-26 123.2 100 61.0
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 1.5e-26 122.9 96 62.5
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 1.9e-26 122.5 97 60.8
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 2.5e-26 122.1 98 59.2
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 3.3e-26 121.7 98 61.2
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 3.3e-26 121.7 98 61.2
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 3.3e-26 121.7 102 60.8
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 5.5e-26 120.9 96 61.5
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 7.2e-26 120.6 97 63.9
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 9.5e-26 120.2 97 59.8
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 9.5e-26 120.2 88 67.0
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 1.2e-25 119.8 98 62.2
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.6e-25 119.4 94 61.7
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 1.6e-25 119.4 100 62.0
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 2.8e-25 118.6 99 60.6
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 4.7e-25 117.9 100 63.0
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 4.7e-25 117.9 100 63.0
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 4.7e-25 117.9 102 56.9
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 8.0e-25 117.1 97 62.9
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.0e-24 116.7 96 60.4
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 1.4e-24 116.3 102 58.8
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 1.8e-24 115.9 96 60.4
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 1.8e-24 115.9 98 60.2
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 2.3e-24 115.5 97 57.7
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 3.0e-24 115.2 95 62.1
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.0e-24 114.8 101 63.4
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 8.9e-24 113.6 97 54.6
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 1.2e-23 113.2 97 57.7
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 2.0e-23 112.5 102 57.8
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 2.0e-23 112.5 89 62.9
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 2.6e-23 112.1 100 58.0
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 9.8e-23 110.2 91 60.4
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 1.7e-22 109.4 98 54.1
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.2e-22 109.0 101 61.4
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 3.7e-22 108.2 91 59.3
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 3.1e-21 105.1 102 55.9
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 3.1e-21 105.1 89 59.6
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.2e-20 103.2 94 58.5
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 1.2e-20 103.2 94 56.4
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 4.5e-20 101.3 76 64.5
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 1.0e-19 100.1 97 55.7
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 3.8e-19 98.2 78 64.1
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 1.5e-18 96.3 78 61.5
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 2.5e-18 95.5 99 49.5
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 2.5e-18 95.5 102 55.9
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 3.3e-18 95.1 94 53.2
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 8.9e-16 87.0 86 48.8
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 5.8e-15 84.3 77 55.8
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.3e-14 83.2 75 58.7
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.3e-14 83.2 100 49.0
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 4.9e-14 81.3 82 53.7
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 6.4e-14 80.9 80 53.8
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 6.4e-14 80.9 80 53.8
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.8e-13 79.3 82 52.4
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 7.0e-13 77.4 87 48.3
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 2.0e-12 75.9 75 50.7
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 4.6e-12 74.7 63 58.7
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 4.6e-12 74.7 84 45.2
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 6.0e-12 74.3 82 50.0
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 7.8e-12 73.9 89 49.4
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.3e-11 73.2 82 48.8
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.1e-10 70.1 84 46.4
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 1.9e-10 69.3 76 47.4
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 4.3e-10 68.2 72 55.6
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 7.3e-10 67.4 85 48.2
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 2.1e-09 65.9 88 47.7
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 2.1e-09 65.9 67 55.2
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 2.1e-09 65.9 69 52.2
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 2.1e-09 65.9 68 48.5
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 3.6e-09 65.1 67 49.3
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 3.6e-09 65.1 67 49.3
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 3.6e-09 65.1 72 48.6
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 4.7e-09 64.7 62 54.8
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 8.0e-09 63.9 62 54.8
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 8.0e-09 63.9 70 50.0
AUR62032414 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.1e-08 63.5 96 42.7
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 1.1e-08 63.5 69 50.7
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 1.1e-08 63.5 72 48.6
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.1e-08 63.5 67 52.2
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 1.4e-08 63.2 96 41.7
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 1.8e-08 62.8 103 39.8
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.8e-08 62.8 69 50.7
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.8e-08 62.8 69 50.7
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 1.8e-08 62.8 82 45.1
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 4.0e-08 61.6 70 48.6
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 4.0e-08 61.6 69 50.7
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 6.8e-08 60.8 65 52.3
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 1.2e-07 60.1 65 43.1
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 1.5e-07 59.7 74 51.4
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 1.5e-07 59.7 74 51.4
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.0e-07 59.3 85 43.5
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 2.0e-07 59.3 78 42.3
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 2.0e-07 59.3 90 44.4
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 2.6e-07 58.9 70 44.3
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 3.4e-07 58.5 76 48.7
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 3.4e-07 58.5 73 45.2
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.4e-07 58.2 85 42.4
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.4e-07 58.2 85 42.4
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 5.8e-07 57.8 63 54.0
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 1.3e-06 56.6 80 43.8
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 1.7e-06 56.2 63 50.8
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 1.7e-06 56.2 63 52.4
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 1.7e-06 56.2 63 52.4
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 1.7e-06 56.2 63 52.4
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 1.7e-06 56.2 63 52.4
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 1.7e-06 56.2 63 52.4
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 1.7e-06 56.2 65 49.2
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 2.2e-06 55.8 79 45.6
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 2.2e-06 55.8 63 50.8
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.2e-06 55.8 47 57.4
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 2.9e-06 55.5 79 44.3
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 2.9e-06 55.5 79 44.3
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 2.9e-06 55.5 62 48.4
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 2.9e-06 55.5 76 43.4
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 3.7e-06 55.1 79 44.3
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 6.4e-06 54.3 79 44.3
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 6.4e-06 54.3 62 45.2
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 8.3e-06 53.9 79 43.0
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 8.3e-06 53.9 79 43.0
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 8.3e-06 53.9 79 43.0
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 8.3e-06 53.9 79 43.0
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 8.3e-06 53.9 79 43.0
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 8.3e-06 53.9 79 43.0


User provided reference genes

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