Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 6.4e-37 156.8 72 100.0
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 1.8e-31 138.7 72 83.3
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 5.3e-31 137.1 72 81.9
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 9.0e-31 136.3 71 83.1
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 1.2e-30 136.0 71 84.5
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 1.5e-30 135.6 72 81.9
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 1.5e-30 135.6 72 81.9
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 3.4e-30 134.4 71 81.7
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 3.4e-30 134.4 71 81.7
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 81.9
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 4.5e-30 134.0 72 83.3
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 4.5e-30 134.0 72 81.9
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 1.3e-29 132.5 71 81.7
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 1.7e-29 132.1 70 82.9
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 2.2e-29 131.7 70 82.9
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 2.2e-29 131.7 70 82.9
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 4.9e-29 130.6 72 77.8
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 4.9e-29 130.6 72 77.8
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 8.4e-29 129.8 72 77.8
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 8.4e-29 129.8 72 77.8
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 1.1e-28 129.4 72 76.4
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 1.1e-28 129.4 72 79.2
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 1.1e-28 129.4 71 78.9
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 1.4e-28 129.0 72 77.8
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 1.4e-28 129.0 72 77.8
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 1.9e-28 128.6 70 81.4
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 2.5e-28 128.3 72 76.4
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 2.5e-28 128.3 72 77.8
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 2.5e-28 128.3 72 77.8
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 3.2e-28 127.9 72 77.8
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 4.2e-28 127.5 72 75.0
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 4.2e-28 127.5 72 76.4
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 4.2e-28 127.5 72 76.4
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 5.5e-28 127.1 72 76.4
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 1.2e-27 125.9 72 75.0
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.2e-27 125.9 72 76.4
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.2e-27 125.9 72 76.4
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.2e-27 125.9 72 76.4
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 1.6e-27 125.6 72 73.6
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 2.1e-27 125.2 72 73.6
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 2.1e-27 125.2 72 75.0
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 2.7e-27 124.8 72 72.2
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 2.7e-27 124.8 72 72.2
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.7e-27 124.8 72 72.2
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 2.7e-27 124.8 72 72.2
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 3.5e-27 124.4 72 70.8
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 3.5e-27 124.4 72 76.4
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 3.5e-27 124.4 72 73.6
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 4.6e-27 124.0 72 73.6
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 4.6e-27 124.0 72 73.6
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 6.0e-27 123.6 72 72.2
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 6.0e-27 123.6 72 72.2
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 6.0e-27 123.6 72 72.2
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 7.9e-27 123.2 72 72.2
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 7.9e-27 123.2 72 72.2
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 7.9e-27 123.2 72 72.2
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 7.9e-27 123.2 72 72.2
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 7.9e-27 123.2 72 72.2
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 7.9e-27 123.2 72 72.2
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 7.9e-27 123.2 72 72.2
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 7.9e-27 123.2 72 72.2
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 7.9e-27 123.2 72 72.2
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 7.9e-27 123.2 72 72.2
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 7.9e-27 123.2 72 70.8
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 7.9e-27 123.2 72 72.2
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 7.9e-27 123.2 72 72.2
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 7.9e-27 123.2 69 75.4
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 7.9e-27 123.2 72 75.0
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 1.0e-26 122.9 72 73.6
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 1.3e-26 122.5 72 73.6
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 1.8e-26 122.1 72 73.6
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 2.3e-26 121.7 72 70.8
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 8.7e-26 119.8 70 74.3
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 1.1e-25 119.4 72 73.6
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.5e-25 119.0 70 74.3
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 1.9e-25 118.6 70 72.9
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 2.5e-25 118.2 72 68.1
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 3.3e-25 117.9 72 68.1
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 4.3e-25 117.5 70 68.6
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 5.7e-25 117.1 68 73.5
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 5.7e-25 117.1 68 73.5
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 7.4e-25 116.7 72 66.7
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 9.6e-25 116.3 68 72.1
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 9.6e-25 116.3 70 67.1
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 1.3e-24 115.9 71 67.6
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 3.7e-24 114.4 71 67.6
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 1.1e-23 112.8 70 67.1
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 5.3e-23 110.5 72 70.8
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 9.0e-23 109.8 72 69.4
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 5.8e-22 107.1 107 48.6
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 5.8e-22 107.1 107 48.6
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 7.6e-22 106.7 68 66.2
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 3.8e-21 104.4 71 64.8
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 3.8e-21 104.4 68 67.6
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 5.0e-21 104.0 57 78.9
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 8.4e-21 103.2 67 64.2
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 1.1e-20 102.8 114 46.5
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 3.2e-20 101.3 61 72.1
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 5.5e-20 100.5 56 76.8
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 7.1e-20 100.1 71 60.6
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 1.2e-19 99.4 56 76.8
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 1.6e-19 99.0 56 78.6
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 2.1e-19 98.6 56 76.8
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 2.7e-19 98.2 71 62.0
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 4.6e-19 97.4 56 75.0
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 7.9e-19 96.7 56 76.8
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 7.9e-19 96.7 56 73.2
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 1.3e-18 95.9 56 73.2
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 3.0e-18 94.7 56 73.2
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 3.0e-18 94.7 56 73.2
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 3.0e-18 94.7 56 73.2
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 3.0e-18 94.7 56 73.2
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 5.1e-18 94.0 56 73.2
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 6.7e-18 93.6 56 69.6
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 6.7e-18 93.6 56 69.6
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 6.7e-18 93.6 56 69.6
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 6.7e-18 93.6 57 66.7
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 8.7e-18 93.2 59 64.4
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 8.7e-18 93.2 56 67.9
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 1.1e-17 92.8 56 69.6
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 1.1e-17 92.8 56 69.6
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 1.1e-17 92.8 56 69.6
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 1.1e-17 92.8 56 69.6
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 1.5e-17 92.4 56 69.6
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 9.7e-17 89.7 56 66.1
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 2.2e-16 88.6 55 70.9
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 2.4e-15 85.1 52 73.1
Solyc09g059220.1 Solanum lycopersicum HOM05D005730 ORTHO05D007038 2.4e-15 85.1 69 53.6
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 3.1e-15 84.7 52 67.3
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 3.4e-14 81.3 68 54.4
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 1.0e-13 79.7 49 65.3
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 5.0e-13 77.4 72 50.0
SMO141G0046 Selaginella moellendorffii HOM05D005730 ORTHO05D007038 6.5e-13 77.0 71 46.5
CDE02G1938 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 1.1e-12 76.3 45 73.3
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.9e-12 75.5 50 68.0
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 2.5e-12 75.1 46 71.7
MCO07G159 Micromonas commoda HOM05D005730 ORTHO05D007038 2.5e-12 75.1 65 52.3
MELO3C019212.2 Cucumis melo HOM05D005730 ORTHO05D007038 2.7e-11 71.6 56 62.5
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 6.1e-11 70.5 56 53.6
Medtr8g107150 Medicago truncatula HOM05D005730 ORTHO05D007038 3.1e-07 58.2 32 78.1
SHI03111 Sapria himalayana HOM05D005730 ORTHO05D007038 6.9e-07 57.0 50 54.0


User provided reference genes

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