Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr13g0304491 Lupinus albus HOM05D007992 ORTHO05D010086 3.0e-28 127.9 67 100.0
Glyma.17G000900 Glycine max HOM05D007992 ORTHO05D010086 6.9e-17 90.1 62 69.4
Lj4g0012187 Lotus japonicus HOM05D007992 ORTHO05D010086 1.2e-16 89.4 63 69.8
QL02p099856 Quercus lobata HOM05D007992 ORTHO05D010086 3.4e-16 87.8 62 67.7
QL93p0310_0002 Quercus lobata HOM05D007992 ORTHO05D010086 3.4e-16 87.8 62 67.7
FAN18G3190 Fragaria x ananassa HOM05D007992 ORTHO05D010086 4.5e-16 87.4 64 65.6
Medtr4g134900 Medicago truncatula HOM05D007992 ORTHO05D010086 4.5e-16 87.4 58 67.2
Phvul.003G074700 Phaseolus vulgaris HOM05D007992 ORTHO05D010086 9.9e-16 86.3 62 66.1
CiPaw.05G051500 Carya illinoinensis HOM05D007992 ORTHO05D010086 1.3e-15 85.9 63 65.1
TWI59G0747 Tripterygium wilfordii HOM05D007992 ORTHO05D010086 1.3e-15 85.9 65 64.6
PSO782G2589 Papaver somniferum HOM05D007992 ORTHO05D010086 1.7e-15 85.5 59 71.2
RcHm_v2.0_Chr7g0220841 Rosa chinensis HOM05D007992 ORTHO05D010086 2.2e-15 85.1 65 63.1
FAN04G0058 Fragaria x ananassa HOM05D007992 ORTHO05D010086 2.9e-15 84.7 62 66.1
Oeu045939.1 Olea europaea HOM05D007992 ORTHO05D010086 4.9e-15 84.0 53 67.9
CSS0028556 Camellia sinensis var. sinensis HOM05D007992 ORTHO05D010086 6.4e-15 83.6 60 66.7
GSVIVG01023280001 Vitis vinifera HOM05D007992 ORTHO05D010086 6.4e-15 83.6 65 63.1
Eucgr.I02752 Eucalyptus grandis HOM05D007992 ORTHO05D010086 1.4e-14 82.4 62 62.9
MD15G1432800 Malus domestica HOM05D007992 ORTHO05D010086 1.4e-14 82.4 65 61.5
Prupe.1G576700 Prunus persica HOM05D007992 ORTHO05D010086 1.9e-14 82.0 62 66.1
Manes.10G120300 Manihot esculenta HOM05D007992 ORTHO05D010086 2.4e-14 81.6 53 67.9
arahy.Tifrunner.gnm1.ann1.5LAZ71 Arachis hypogaea HOM05D007992 ORTHO05D010086 4.2e-14 80.9 63 61.9
arahy.Tifrunner.gnm1.ann1.UKT1PL Arachis hypogaea HOM05D007992 ORTHO05D010086 4.2e-14 80.9 63 61.9
CsaV3_3G019300 Cucumis sativus L. HOM05D007992 ORTHO05D010086 4.2e-14 80.9 62 62.9
HanXRQChr07g0187511 Helianthus annuus HOM05D007992 ORTHO05D010086 4.2e-14 80.9 58 63.8
Peaxi162Scf00011g00937 Petunia axillaris HOM05D007992 ORTHO05D010086 7.1e-14 80.1 53 66.0
Sed0016814 Sechium edule HOM05D007992 ORTHO05D010086 7.1e-14 80.1 62 59.7
Potri.003G009800 Populus trichocarpa HOM05D007992 ORTHO05D010086 9.3e-14 79.7 53 67.9
PGR142G0328 Punica granatum HOM05D007992 ORTHO05D010086 1.2e-13 79.3 53 64.2
DCAR_025353 Daucus carota HOM05D007992 ORTHO05D010086 1.6e-13 79.0 60 60.0
Nitab4.5_0000948g0130 Nicotiana tabacum HOM05D007992 ORTHO05D010086 1.6e-13 79.0 53 64.2
Nitab4.5_0002596g0010 Nicotiana tabacum HOM05D007992 ORTHO05D010086 1.6e-13 79.0 53 64.2
CANSAT54G2040 Cannabis sativa HOM05D007992 ORTHO05D010086 2.7e-13 78.2 55 61.8
CAN.G798.45 Capsicum annuum HOM05D007992 ORTHO05D010086 2.7e-13 78.2 53 64.2
Cc02_g22280 Coffea canephora HOM05D007992 ORTHO05D010086 2.7e-13 78.2 53 64.2
Migut.B00791 Erythranthe guttata HOM05D007992 ORTHO05D010086 2.7e-13 78.2 53 62.3
THA.LOC104820254 Tarenaya hassleriana HOM05D007992 ORTHO05D010086 3.5e-13 77.8 53 62.3
Lsat_1_v5_gn_7_79260 Lactuca sativa HOM05D007992 ORTHO05D010086 6.0e-13 77.0 53 62.3
Zm00001eb138500 Zea mays HOM05D007992 ORTHO05D010086 7.9e-13 76.6 53 64.2
MELO3C031671.2 Cucumis melo HOM05D007992 ORTHO05D010086 1.3e-12 75.9 62 59.7
Os12g0182600 Oryza sativa ssp. japonica HOM05D007992 ORTHO05D010086 1.8e-12 75.5 55 60.0
vmacro01727 Vaccinium macrocarpon HOM05D007992 ORTHO05D010086 2.3e-12 75.1 68 52.9
Actinidia26161 Actinidia chinensis HOM05D000243 ORTHO05D010086 6.7e-12 73.6 49 71.4
Nn5g27747 Nelumbo nucifera HOM05D007992 ORTHO05D010086 6.7e-12 73.6 63 54.0
Thhalv10009288m.g Eutrema salsugineum HOM05D007992 ORTHO05D010086 8.7e-12 73.2 53 58.5
AagrBONN_evm.TU.Sc2ySwM_228.5013 Anthoceros agrestis HOM05D007992 ORTHO05D010086 1.5e-11 72.4 57 54.4
AT1G09794 Arabidopsis thaliana HOM05D007992 ORTHO05D010086 1.9e-11 72.0 53 56.6
Carub.0001s0914 Capsella rubella HOM05D007992 ORTHO05D010086 1.9e-11 72.0 53 56.6
CARHR009770 Cardamine hirsuta HOM05D007992 ORTHO05D010086 1.9e-11 72.0 53 56.6
C05p07870 Brassica napus HOM05D007992 ORTHO05D010086 5.6e-11 70.5 53 58.5
BolC5t29538H Brassica oleracea HOM05D007992 ORTHO05D010086 5.6e-11 70.5 53 58.5
AUR62023424 Chenopodium quinoa HOM05D007992 ORTHO05D010086 7.4e-11 70.1 57 57.9
A06p06460 Brassica napus HOM05D007992 ORTHO05D010086 1.3e-10 69.3 53 56.6
BraA06t23857Z Brassica rapa HOM05D007992 ORTHO05D010086 1.3e-10 69.3 53 56.6
Aa31LG1G5180 Aethionema arabicum HOM05D007992 ORTHO05D010086 2.1e-10 68.6 53 56.6
EL10Ac1g00780 Beta vulgaris HOM05D007992 ORTHO05D010086 2.1e-10 68.6 52 57.7
SalBow7G0224 Salvia bowleyana HOM05D007992 ORTHO05D010086 8.2e-10 66.6 61 49.2
Aqoxy6G00119 Aquilegia oxysepala HOM05D007992 ORTHO05D010086 1.8e-09 65.5 53 58.5
CBR_g44919 Chara braunii HOM05D007992 ORTHO05D010086 6.9e-09 63.5 55 52.7
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 7.6e-08 60.1 42 61.9
SMO367G0246 Selaginella moellendorffii HOM05D007992 ORTHO05D010086 1.7e-07 58.9 67 37.3
Rhsim11G0125500 Rhododendron simsii HOM05D007992 ORTHO05D010086 3.8e-07 57.8 35 65.7
MD08G1240200 Malus domestica HOM05D007992 ORTHO05D010086 1.1e-06 56.2 60 45.0
Pp3c6_8240 Physcomitrium patens HOM05D007992 ORTHO05D010086 1.1e-06 56.2 53 47.2
Sabra03G0005100 Salix brachista HOM05D007992 ORTHO05D010086 1.4e-06 55.8 30 76.7


User provided reference genes

Program Settings