Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 0.0e+00 1199.9 601 100.0
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 1.8e-294 1015.4 607 84.3
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 5.0e-292 1007.3 607 84.2
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 2.7e-290 1001.5 607 84.0
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 8.0e-290 1000.0 602 84.4
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 8.8e-289 996.5 602 84.6
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 9.8e-280 966.5 606 80.5
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 1.7e-276 955.7 596 81.7
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 2.0e-261 905.6 597 78.2
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 1.3e-260 902.9 602 76.1
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 1.1e-259 899.8 602 75.6
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 4.7e-258 894.4 595 76.3
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 8.9e-257 890.2 589 77.1
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 5.8e-256 887.5 609 74.1
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 9.8e-256 886.7 601 75.2
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 1.3e-255 886.3 585 77.8
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 1.7e-255 885.9 587 77.3
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 2.4e-254 882.1 600 75.2
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 6.0e-253 877.5 590 76.4
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 7.8e-253 877.1 606 74.3
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 7.8e-253 877.1 574 78.2
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.3e-252 875.5 594 74.7
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 2.3e-252 875.5 606 74.8
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 3.0e-252 875.2 586 76.6
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 1.5e-251 872.8 586 76.3
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.5e-251 872.8 608 73.2
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 3.3e-251 871.7 608 73.2
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 1.6e-250 869.4 604 73.7
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.8e-250 868.6 581 76.6
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 4.7e-250 867.8 576 76.4
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 4.7e-250 867.8 573 77.5
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 1.1e-249 866.7 606 72.6
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 1.4e-249 866.3 570 77.4
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 1.8e-249 865.9 560 78.2
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 1.8e-249 865.9 560 78.2
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 3.1e-249 865.1 601 73.9
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 5.2e-249 864.4 602 74.8
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 6.8e-249 864.0 581 76.1
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 3.4e-248 861.7 601 74.5
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.4e-248 861.7 578 76.0
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.7e-247 859.4 580 75.5
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 3.7e-247 858.2 575 76.0
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.4e-246 856.3 585 74.9
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 1.9e-246 855.9 580 75.3
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 2.4e-246 855.5 573 76.6
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 4.1e-246 854.7 573 76.1
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 4.1e-246 854.7 573 76.6
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.2e-245 853.2 575 76.0
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 1.2e-245 853.2 594 75.9
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 1.3e-244 849.7 590 73.7
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.7e-244 849.4 590 74.1
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.3e-244 849.0 583 75.0
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 6.6e-244 847.4 574 75.6
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 8.6e-244 847.0 596 74.0
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 1.9e-243 845.9 601 73.0
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 2.5e-243 845.5 573 75.7
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 5.6e-243 844.3 601 73.4
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 7.3e-243 844.0 605 72.7
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 1.6e-242 842.8 573 74.7
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.6e-242 842.8 576 75.3
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 3.6e-242 841.6 609 70.9
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 4.7e-242 841.3 606 71.1
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 6.2e-242 840.9 577 75.0
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.8e-241 839.3 590 73.4
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 2.3e-241 839.0 622 71.5
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 3.1e-241 838.6 622 71.5
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 8.9e-241 837.0 606 70.8
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 8.9e-241 837.0 585 74.0
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.2e-240 836.6 616 71.1
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.0e-240 835.9 607 72.0
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 2.6e-240 835.5 579 74.1
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 3.4e-240 835.1 582 73.0
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 4.4e-240 834.7 591 73.6
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 4.4e-240 834.7 525 81.0
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 7.6e-240 833.9 607 71.8
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 7.6e-240 833.9 582 74.7
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 1.4e-238 829.7 601 72.0
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 3.5e-237 825.1 569 74.2
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 4.3e-235 818.1 600 70.7
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 1.2e-234 816.6 521 78.3
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 1.2e-234 816.6 605 69.1
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 5.8e-232 807.7 600 69.3
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 2.2e-231 805.8 601 70.7
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 3.8e-231 805.1 594 70.7
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 4.9e-231 804.7 546 74.5
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 6.4e-231 804.3 600 70.3
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 1.1e-230 803.5 589 70.3
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 1.4e-230 803.1 581 71.8
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 5.4e-230 801.2 580 71.0
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 1.3e-226 790.0 577 71.2
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 1.4e-225 786.6 649 64.6
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.8e-225 786.2 517 77.6
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 4.0e-225 785.0 604 69.0
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 5.3e-225 784.6 574 70.6
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 5.3e-225 784.6 597 68.7
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.2e-224 783.5 574 71.4
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 9.9e-224 780.4 578 70.9
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 6.4e-223 777.7 599 68.9
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 1.4e-222 776.5 601 68.2
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.9e-222 776.2 587 68.0
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 5.4e-222 774.6 607 67.2
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 9.3e-222 773.9 576 70.3
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 3.5e-221 771.9 521 75.4
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 3.5e-221 771.9 600 67.8
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 4.6e-221 771.5 574 69.9
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 7.9e-221 770.8 574 70.2
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 7.9e-221 770.8 574 70.2
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.0e-220 770.4 600 67.7
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 1.5e-219 766.5 579 69.6
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 9.6e-219 763.8 600 67.3
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.8e-218 762.3 618 65.4
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.8e-218 762.3 578 69.9
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 1.4e-217 760.0 600 67.0
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 1.4e-217 760.0 600 67.0
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 2.4e-217 759.2 579 68.6
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 9.0e-217 757.3 576 68.8
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 7.6e-216 754.2 601 64.7
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 1.3e-212 743.4 524 72.1
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.9e-211 739.6 545 71.4
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 2.8e-210 735.7 572 68.7
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 4.5e-208 728.4 547 70.4
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 6.5e-207 724.5 585 67.2
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 2.1e-205 719.5 536 69.6
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.6e-205 718.4 572 65.9
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 7.9e-205 717.6 514 69.8
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.5e-203 713.4 530 67.7
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 5.7e-203 711.4 587 63.9
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.3e-199 700.3 576 64.6
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.2e-199 699.5 519 68.8
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 7.9e-197 691.0 533 64.0
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 7.4e-195 684.5 421 80.8
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 8.2e-194 681.0 523 66.3
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.2e-191 672.9 527 65.5
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.0e-191 671.8 527 65.1
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.2e-190 669.1 527 65.3
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 4.2e-190 668.7 575 64.0
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 5.1e-188 661.8 408 80.9
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.6e-187 659.4 408 80.1
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 9.7e-187 657.5 413 80.6
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.4e-185 653.7 577 60.5
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.4e-184 649.0 527 63.6
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 2.9e-183 646.0 495 66.3
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 1.4e-180 637.1 513 64.7
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.1e-177 627.5 495 63.8
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 4.2e-166 589.0 581 52.8
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 2.2e-162 576.6 428 72.4
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 4.5e-152 542.3 379 73.1
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 4.5e-152 542.3 476 57.6
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 1.7e-146 523.9 531 55.7
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.0e-127 461.5 318 75.2
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 9.5e-126 454.9 459 55.3
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 7.6e-123 445.3 312 74.4
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 1.9e-102 377.5 249 75.9
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.3e-69 268.5 157 85.4
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 2.7e-64 250.8 145 86.2
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 3.0e-47 194.1 163 60.7
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 2.0e-46 191.4 166 59.0
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 4.1e-44 183.7 163 58.3
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 2.7e-43 181.0 163 57.7
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 1.1e-36 159.1 123 65.0
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 2.4e-36 157.9 98 79.6
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 5.2e-23 113.6 88 63.6
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 9.8e-22 109.4 88 62.5
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 3.7e-21 107.5 115 51.3
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.0e-20 103.2 312 26.9
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 5.1e-18 97.1 60 78.3
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.2e-16 92.4 187 31.0
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.6e-16 90.9 185 35.1
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 8.1e-16 89.7 86 55.8
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 7.5e-14 83.2 124 38.7
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 9.9e-14 82.8 84 59.5
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 6.4e-13 80.1 70 68.6
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 2.1e-08 65.1 58 53.4
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.1e-07 62.8 66 56.1


User provided reference genes

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