Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 0.0e+00 1400.6 739 100.0
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 4.5e-287 991.1 753 71.8
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 1.9e-277 959.1 751 69.6
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 9.5e-277 956.8 752 70.5
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 3.4e-274 948.3 751 69.6
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 2.5e-269 932.2 746 69.3
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 6.4e-265 917.5 713 70.7
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 3.6e-260 901.7 744 67.5
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 5.8e-258 894.4 740 67.0
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 5.6e-253 877.9 746 65.4
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 2.0e-250 869.4 748 64.3
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 1.0e-201 707.6 746 52.8
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 3.7e-196 689.1 750 51.7
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 1.2e-191 674.1 733 52.1
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 3.6e-183 646.0 753 51.4
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 1.2e-181 641.0 750 51.3
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 2.0e-178 630.2 749 49.8
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 9.5e-176 621.3 741 49.7
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 1.2e-175 620.9 736 49.2
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 1.6e-175 620.5 735 48.2
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 2.3e-174 616.7 745 49.9
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 6.8e-174 615.1 746 48.7
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.2e-173 614.4 745 49.5
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 2.0e-173 613.6 745 49.8
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 3.4e-173 612.8 745 49.5
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 5.7e-173 612.1 745 49.1
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 6.3e-172 608.6 741 49.4
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 3.2e-171 606.3 730 49.5
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 5.0e-169 599.0 745 47.8
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 9.5e-168 594.7 745 48.2
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 3.4e-165 586.3 747 46.7
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 6.6e-161 572.0 736 46.6
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 2.8e-159 566.6 740 46.6
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 4.4e-157 559.3 695 48.5
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 4.4e-157 559.3 719 46.5
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 1.9e-155 553.9 719 45.5
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 2.4e-155 553.5 656 48.3
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 5.4e-155 552.4 753 47.5
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 1.7e-153 547.4 728 45.1
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 3.9e-153 546.2 742 44.1
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 1.2e-151 541.2 733 45.2
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 1.2e-151 541.2 723 44.3
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 4.0e-150 536.2 727 45.1
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 1.2e-149 534.6 723 43.8
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 1.9e-144 517.3 771 42.4
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 1.1e-142 511.5 748 43.6
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 9.3e-139 498.4 730 44.0
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 1.2e-138 498.0 334 79.3
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 1.7e-132 477.6 696 43.1
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 2.4e-131 473.8 753 41.3
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 4.2e-131 473.0 694 43.1
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 7.1e-131 472.2 709 43.6
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 1.7e-129 467.6 796 40.7
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 1.7e-129 467.6 796 40.7
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 8.7e-129 465.3 697 43.0
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 1.9e-128 464.2 707 42.0
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 1.6e-127 461.1 705 41.8
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 2.1e-127 460.7 745 40.9
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 2.1e-127 460.7 752 42.0
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 3.6e-127 459.9 748 40.9
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 1.8e-126 457.6 702 43.0
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 1.5e-125 454.5 761 40.3
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 9.9e-125 451.8 683 42.2
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 1.3e-124 451.4 739 40.1
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 2.5e-120 437.2 689 41.7
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 4.0e-118 429.9 814 38.6
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 6.9e-118 429.1 751 39.0
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 5.8e-117 426.0 728 39.4
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 3.2e-115 420.2 690 40.6
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 1.3e-113 414.8 744 39.2
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 2.1e-111 407.5 742 38.5
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 1.8e-110 404.4 742 38.8
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 1.3e-105 388.3 584 42.5
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 3.0e-105 387.1 702 40.5
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 1.6e-103 381.3 553 46.3
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 1.3e-100 371.7 306 63.7
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 7.7e-93 345.9 737 34.3
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 6.5e-92 342.8 728 36.1
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 6.5e-92 342.8 456 48.0
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 1.4e-86 325.1 392 50.5
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 1.7e-84 318.2 580 37.8
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 2.8e-79 300.8 241 63.5
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 5.3e-78 296.6 319 50.2
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 4.5e-77 293.5 399 45.1
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 3.8e-76 290.4 266 57.5
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 6.1e-66 256.5 207 66.2
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 4.6e-53 213.8 322 41.0
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 1.7e-52 211.8 433 37.2
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 1.2e-42 179.1 158 58.9
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 3.1e-41 174.5 157 59.9
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 5.8e-32 143.7 326 35.9
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 1.9e-30 138.7 97 68.0
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 2.8e-26 124.8 187 40.6
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 9.0e-17 93.2 83 53.0
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 6.4e-15 87.0 80 53.8
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 5.1e-12 77.4 156 35.3
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 2.4e-09 68.6 231 27.3
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 4.9e-07 60.8 79 41.8


User provided reference genes

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