Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr13g0299091 Lupinus albus HOM05D006517 ORTHO05D007886 4.6e-166 587.8 293 100.0
Glyma.13G116000 Glycine max HOM05D006517 ORTHO05D007886 4.5e-137 491.5 294 85.4
Lj4g0027818 Lotus japonicus HOM05D006517 ORTHO05D007886 2.3e-133 479.2 289 83.4
Medtr4g124370 Medicago truncatula HOM05D006517 ORTHO05D007886 2.3e-133 479.2 294 82.7
Ca_21351_v3 Cicer arietinum L. HOM05D006517 ORTHO05D007886 8.2e-131 470.7 289 84.1
Glyma.17G043800 Glycine max HOM05D006517 ORTHO05D007886 1.8e-130 469.5 294 82.7
TPR.G12541 Trifolium pratense HOM05D006517 ORTHO05D007886 1.2e-129 466.8 294 82.7
Phvul.003G125800 Phaseolus vulgaris HOM05D006517 ORTHO05D007886 5.7e-124 448.0 288 79.9
CiPaw.03G198900 Carya illinoinensis HOM05D006517 ORTHO05D007886 3.7e-115 418.7 294 72.4
QL11p003516 Quercus lobata HOM05D006517 ORTHO05D007886 6.1e-110 401.4 289 71.3
Manes.03G055100 Manihot esculenta HOM05D006517 ORTHO05D007886 8.8e-109 397.5 282 71.6
Potri.018G047000 Populus trichocarpa HOM05D006517 ORTHO05D007886 9.7e-108 394.0 286 69.6
arahy.Tifrunner.gnm1.ann1.2S6U7G Arachis hypogaea HOM05D006517 ORTHO05D007886 9.1e-106 387.5 265 77.4
Psat4g020160 Pisum sativum HOM05D006517 ORTHO05D007886 3.5e-105 385.6 237 81.0
Prupe.7G189300 Prunus persica HOM05D006517 ORTHO05D007886 3.5e-105 385.6 281 70.8
Cfa010680 Carpinus fangiana HOM05D006517 ORTHO05D007886 5.9e-105 384.8 290 68.3
Duzib150G1397 Durio zibethinus HOM05D006517 ORTHO05D007886 2.5e-103 379.4 284 69.0
Gohir.D08G268100 Gossypium hirsutum HOM05D006517 ORTHO05D007886 7.2e-103 377.9 287 67.2
Gorai.004G285800 Gossypium raimondii HOM05D006517 ORTHO05D007886 7.2e-103 377.9 287 67.2
Duzib168G1027 Durio zibethinus HOM05D006517 ORTHO05D007886 9.4e-103 377.5 283 69.3
GSVIVG01000273001 Vitis vinifera HOM05D006517 ORTHO05D007886 8.8e-101 370.9 285 66.0
Atru.chr7.1806 Acer truncatum HOM05D006517 ORTHO05D007886 1.5e-100 370.2 282 68.4
Gohir.A08G246900 Gossypium hirsutum HOM05D006517 ORTHO05D007886 3.4e-100 369.0 287 66.2
RcHm_v2.0_Chr2g0096541 Rosa chinensis HOM05D006517 ORTHO05D007886 3.4e-100 369.0 281 69.4
CSS0016512 Camellia sinensis var. sinensis HOM05D006517 ORTHO05D007886 1.3e-99 367.1 282 68.4
COL.COLO4_21178 Corchorus olitorius HOM05D006517 ORTHO05D007886 1.3e-99 367.1 283 67.1
Eucgr.C00754 Eucalyptus grandis HOM05D006517 ORTHO05D007886 1.2e-97 360.5 281 68.0
Dinv42443 Davidia involucrata HOM05D006517 ORTHO05D007886 1.3e-96 357.1 281 67.3
TAR383G1010 Trochodendron aralioides HOM05D006517 ORTHO05D007886 2.3e-96 356.3 283 65.0
PGR124G0001 Punica granatum HOM05D006517 ORTHO05D007886 8.6e-96 354.4 283 66.1
PGR142G0057 Punica granatum HOM05D006517 ORTHO05D007886 8.6e-96 354.4 283 66.1
Thecc.09G067300 Theobroma cacao HOM05D006517 ORTHO05D007886 1.5e-95 353.6 283 65.7
Oeu000272.2 Olea europaea HOM05D006517 ORTHO05D007886 1.2e-94 350.5 287 64.5
Potri.006G217100 Populus trichocarpa HOM05D006517 ORTHO05D007886 1.8e-93 346.7 287 63.1
MD15G1225700 Malus domestica HOM05D006517 ORTHO05D007886 8.9e-93 344.4 282 64.2
VMungo1215G1783 Vigna mungo HOM05D006517 ORTHO05D007886 2.0e-92 343.2 290 65.2
Migut.J00866 Erythranthe guttata HOM05D006517 ORTHO05D007886 9.8e-92 340.9 290 63.4
Nitab4.5_0000987g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 3.7e-91 339.0 285 61.4
THA.LOC104804445 Tarenaya hassleriana HOM05D006517 ORTHO05D007886 6.3e-91 338.2 283 63.6
arahy.Tifrunner.gnm1.ann1.0410DC Arachis hypogaea HOM05D006517 ORTHO05D007886 1.8e-90 336.7 238 74.8
FAN23G1398 Fragaria x ananassa HOM05D006517 ORTHO05D007886 3.1e-90 335.9 281 63.7
Lsat_1_v5_gn_8_118080 Lactuca sativa HOM05D006517 ORTHO05D007886 1.2e-89 334.0 281 64.8
ClCG03G014700 Citrullus lanatus HOM05D006517 ORTHO05D007886 7.8e-89 331.3 282 63.1
CsaV3_1G041470 Cucumis sativus L. HOM05D006517 ORTHO05D007886 6.6e-88 328.2 283 61.1
Ciclev10009053m.g Citrus clementina HOM05D006517 ORTHO05D007886 5.6e-87 325.1 283 61.1
CAN.G55.2 Capsicum annuum HOM05D006517 ORTHO05D007886 9.5e-87 324.3 289 59.9
Duzib187G0844 Durio zibethinus HOM05D006517 ORTHO05D007886 8.0e-86 321.2 283 63.3
PSO675G5415 Papaver somniferum HOM05D006517 ORTHO05D007886 8.0e-86 321.2 280 59.3
PSO541G2149 Papaver somniferum HOM05D006517 ORTHO05D007886 1.4e-85 320.5 280 59.6
Sed0014627 Sechium edule HOM05D006517 ORTHO05D007886 3.1e-85 319.3 281 61.9
FvH4_1g09680 Fragaria vesca HOM05D006517 ORTHO05D007886 5.2e-85 318.5 281 61.6
FAN26G1998 Fragaria x ananassa HOM05D006517 ORTHO05D007886 5.2e-85 318.5 281 61.6
HanXRQChr09g0258421 Helianthus annuus HOM05D006517 ORTHO05D007886 1.5e-84 317.0 283 60.1
AUR62025324 Chenopodium quinoa HOM05D006517 ORTHO05D007886 2.6e-84 316.2 285 59.6
CANSAT56G3804 Cannabis sativa HOM05D006517 ORTHO05D007886 3.4e-84 315.8 287 59.6
MELO3C015558.2 Cucumis melo HOM05D006517 ORTHO05D007886 1.7e-83 313.5 284 60.2
MD02G1105800 Malus domestica HOM05D006517 ORTHO05D007886 2.2e-83 313.2 281 61.2
EL10Ac8g18944 Beta vulgaris HOM05D006517 ORTHO05D007886 2.9e-83 312.8 282 60.3
CANSAT56G0784 Cannabis sativa HOM05D006517 ORTHO05D007886 3.7e-83 312.4 287 58.9
ATR0006G021 Amborella trichopoda HOM05D006517 ORTHO05D007886 6.4e-83 311.6 294 57.5
Sc18g0002960 Simmondsia chinensis HOM05D006517 ORTHO05D007886 1.4e-82 310.5 283 59.7
CDE05G1274 Ceratophyllum demersum HOM05D006517 ORTHO05D007886 4.1e-82 308.9 290 58.3
unitig_26.g9120 Utricularia gibba HOM05D006517 ORTHO05D007886 4.1e-82 308.9 287 59.9
MBI13_g05966_MAGBIO Magnolia biondii HOM05D006517 ORTHO05D007886 9.2e-82 307.8 286 58.0
Aqoxy7G00916 Aquilegia oxysepala HOM05D006517 ORTHO05D007886 1.2e-81 307.4 288 55.9
Sabra06G0167400 Salix brachista HOM05D006517 ORTHO05D007886 4.6e-81 305.4 303 56.8
Nitab4.5_0005239g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 1.0e-80 304.3 285 57.2
Hund08920 Selenicereus undatus HOM05D006517 ORTHO05D007886 7.3e-79 298.1 282 56.0
ECA232G0292 Erigeron canadensis HOM05D001622 ORTHO05D002989 2.3e-77 293.1 269 60.6
SGA_v2.0_scaffold318G48507 Striga asiatica HOM05D006517 ORTHO05D007886 3.7e-75 285.8 304 52.6
FAN26G3113 Fragaria x ananassa HOM05D006517 ORTHO05D007886 2.1e-73 280.0 281 56.9
Oeu000950.1 Olea europaea HOM05D006517 ORTHO05D007886 2.7e-73 279.6 247 61.9
Actinidia39602 Actinidia chinensis HOM05D006517 ORTHO05D007886 7.8e-73 278.1 240 62.9
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 3.0e-72 276.2 254 60.2
Zm00001eb327610 Zea mays HOM05D006517 ORTHO05D007886 5.6e-71 271.9 283 51.2
Actinidia39601 Actinidia chinensis HOM05D006517 ORTHO05D007886 2.1e-70 270.0 236 61.9
SalBow6G1494 Salvia bowleyana HOM05D006517 ORTHO05D007886 3.4e-68 262.7 257 57.2
AUR62028338 Chenopodium quinoa HOM05D000417 ORTHO05D007886 4.4e-68 262.3 275 53.8
FAN28G2617 Fragaria x ananassa HOM05D006517 ORTHO05D007886 6.4e-67 258.5 281 54.8
Os07g0618600 Oryza sativa ssp. japonica HOM05D006517 ORTHO05D007886 2.1e-65 253.4 294 48.3
FAN23G2301 Fragaria x ananassa HOM05D006517 ORTHO05D007886 6.6e-64 248.4 281 53.4
Mapoly0086s0040 Marchantia polymorpha HOM05D006517 ORTHO05D007886 6.6e-64 248.4 292 48.6
Nn8g38504 Nelumbo nucifera HOM05D006517 ORTHO05D007886 5.6e-63 245.4 285 47.7
SGA_v2.0_scaffold31G12706 Striga asiatica HOM05D006517 ORTHO05D007886 1.5e-60 237.3 239 56.1
SMO117G0175 Selaginella moellendorffii HOM05D006517 ORTHO05D007886 7.1e-58 228.4 309 44.3
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 1.9e-55 220.3 245 51.4
DCAR_010521 Daucus carota HOM05D006517 ORTHO05D007886 3.4e-52 209.5 294 46.6
Aa31LG5G9580 Aethionema arabicum HOM05D006517 ORTHO05D007886 2.4e-50 203.4 207 55.1
AL4G18760 Arabidopsis lyrata HOM05D006517 ORTHO05D007886 4.2e-50 202.6 208 57.2
Rhsim05G0081000 Rhododendron simsii HOM05D006517 ORTHO05D007886 5.4e-50 202.2 266 48.1
AT2G26210 Arabidopsis thaliana HOM05D006517 ORTHO05D007886 4.6e-49 199.1 210 56.2
Sp4g06310 Schrenkiella parvula HOM05D006517 ORTHO05D007886 4.6e-49 199.1 205 56.6
HPP92_002241 Vanilla planifolia HOM05D000872 ORTHO05D000777 5.1e-48 195.7 253 47.8
Carub.0004s0605 Capsella rubella HOM05D006517 ORTHO05D007886 7.3e-47 191.8 207 53.6
CARHR115040 Cardamine hirsuta HOM05D006517 ORTHO05D007886 2.8e-46 189.9 206 55.3
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 3.6e-46 189.5 210 51.9
C04p55990 Brassica napus HOM05D006517 ORTHO05D007886 4.8e-46 189.1 181 57.5
BolC4t27132H Brassica oleracea HOM05D006517 ORTHO05D007886 4.8e-46 189.1 169 59.8
BraA04t17607Z Brassica rapa HOM05D006517 ORTHO05D007886 8.1e-46 188.3 169 59.2
CBR_g36802 Chara braunii HOM05D006517 ORTHO05D007886 1.4e-45 187.6 289 37.4
A04p20280 Brassica napus HOM05D006517 ORTHO05D007886 1.8e-45 187.2 169 59.2
Pp3c18_11010 Physcomitrium patens HOM05D006517 ORTHO05D007886 9.0e-45 184.9 289 38.4
Cpa.g.sc82.30 Carica papaya HOM05D006517 ORTHO05D007886 9.9e-44 181.4 113 78.8
Solyc06g031680.2 Solanum lycopersicum HOM05D006517 ORTHO05D007886 2.1e-41 173.7 173 53.2
Cc09_g04390 Coffea canephora HOM05D006517 ORTHO05D007886 7.4e-39 165.2 143 59.4
Cc09_g04380 Coffea canephora HOM05D006517 ORTHO05D007886 9.6e-39 164.9 135 64.4
FAN19G3155 Fragaria x ananassa HOM05D006517 ORTHO05D007886 9.6e-39 164.9 212 50.0
Sopen06g010170 Solanum pennellii HOM05D006517 ORTHO05D007886 4.8e-38 162.5 143 57.3
AagrBONN_evm.TU.Sc2ySwM_362.2898 Anthoceros agrestis HOM05D006517 ORTHO05D007886 1.4e-37 161.0 225 44.9
BcaNung07167 Brassica carinata HOM05D006517 ORTHO05D007886 3.4e-36 156.4 181 51.9
Solyc06g031690.4 Solanum lycopersicum HOM05D006517 ORTHO05D007886 2.2e-35 153.7 94 78.7
Thhalv10002200m.g Eutrema salsugineum HOM05D006517 ORTHO05D007886 8.7e-32 141.7 207 45.4
SEGI_24061 Sequoiadendron giganteum HOM05D006517 ORTHO05D007886 3.3e-31 139.8 185 49.7
Cpa.g.sc82.25 Carica papaya HOM05D006517 ORTHO05D007886 8.4e-27 125.2 65 84.6
Medtr5g081760 Medicago truncatula HOM05D006517 ORTHO05D007886 1.9e-23 114.0 89 67.4
Peaxi162Scf00658g00031 Petunia axillaris HOM05D000115 ORTHO05D000464 4.1e-21 106.3 173 41.6
vmacro13145 Vaccinium macrocarpon HOM05D006517 ORTHO05D007886 6.9e-21 105.5 218 39.4
Medtr8g098885 Medicago truncatula HOM05D006517 ORTHO05D007886 2.5e-18 97.1 57 82.5
Medtr4g036440 Medicago truncatula HOM05D006517 ORTHO05D007886 9.4e-18 95.1 75 68.0
Lsat_1_v5_gn_5_30201 Lactuca sativa HOM05D006517 ORTHO05D007886 2.6e-12 77.0 100 47.0
Cpa.g.sc82.29 Carica papaya HOM05D006517 ORTHO05D007886 4.7e-09 66.2 73 49.3
TWI73G0176 Tripterygium wilfordii HOM05D000088 ORTHO05D003056 1.8e-08 64.3 97 37.1
Ca_00492_v3 Cicer arietinum L. HOM05D000088 ORTHO05D003056 2.0e-07 60.8 126 33.3
Thecc.06G161000 Theobroma cacao HOM05D000088 ORTHO05D003056 2.6e-07 60.5 126 33.3
Medtr0259s0040 Medicago truncatula HOM05D006517 ORTHO05D258276 3.3e-07 60.1 58 56.9
TWI09G1601 Tripterygium wilfordii HOM05D000088 ORTHO05D003056 4.4e-07 59.7 127 31.5
Potri.004G064400 Populus trichocarpa HOM05D000088 ORTHO05D003056 5.7e-07 59.3 117 29.9
HanXRQChr16g0531491 Helianthus annuus HOM05D003211 ORTHO05D003621 9.7e-07 58.5 123 31.7
Cpa.g.sc50.67 Carica papaya HOM05D000088 ORTHO05D003056 1.3e-06 58.2 118 32.2
Lsat_1_v5_gn_3_72021 Lactuca sativa HOM05D003211 ORTHO05D003621 1.7e-06 57.8 122 31.1
Psat1g193640 Pisum sativum HOM05D000088 ORTHO05D003056 1.7e-06 57.8 126 31.7
Actinidia15442 Actinidia chinensis HOM05D003211 ORTHO05D003621 2.2e-06 57.4 121 30.6
Dinv12721 Davidia involucrata HOM05D000088 ORTHO05D003056 2.2e-06 57.4 97 34.0
PSO675G5861 Papaver somniferum HOM05D000088 ORTHO05D003056 2.2e-06 57.4 85 32.9
BcaNung04872 Brassica carinata HOM05D000088 ORTHO05D003056 2.8e-06 57.0 90 36.7
PSO541G2251 Papaver somniferum HOM05D000088 ORTHO05D003056 2.8e-06 57.0 85 32.9
Psat2g015120 Pisum sativum HOM05D000088 ORTHO05D003056 3.7e-06 56.6 80 37.5
Cpa.g.sc442.1 Carica papaya HOM05D000088 ORTHO05D003056 4.8e-06 56.2 124 30.6
SalBow3G1150 Salvia bowleyana HOM05D003211 ORTHO05D003621 4.8e-06 56.2 120 29.2
SalBow3G3139 Salvia bowleyana HOM05D003211 ORTHO05D003621 4.8e-06 56.2 120 29.2
Sc18g0002870 Simmondsia chinensis HOM05D000903 ORTHO05D000731 4.8e-06 56.2 72 37.5
BcaB04g18510 Brassica carinata HOM05D000088 ORTHO05D003056 6.3e-06 55.8 80 38.8
Lj6g0019783 Lotus japonicus HOM05D000088 ORTHO05D003056 6.3e-06 55.8 125 31.2
Os07g0573300 Oryza sativa ssp. japonica HOM05D003211 ORTHO05D003621 6.3e-06 55.8 107 29.9
Psat4g165520 Pisum sativum HOM05D000903 ORTHO05D000731 6.3e-06 55.8 120 30.0
Sp7g17660 Schrenkiella parvula HOM05D000088 ORTHO05D003056 6.3e-06 55.8 90 36.7
MELO3C002689.2 Cucumis melo HOM05D000088 ORTHO05D003056 8.2e-06 55.5 90 34.4
Oeu026472.1 Olea europaea HOM05D000088 ORTHO05D003056 8.2e-06 55.5 111 31.5
Sed0009859 Sechium edule HOM05D000088 ORTHO05D003056 8.2e-06 55.5 90 34.4
TAR633G2105 Trochodendron aralioides HOM05D007663 ORTHO05D009455 8.2e-06 55.5 75 38.7


User provided reference genes

Program Settings