Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 8.4e-288 993.0 521 100.0
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 8.0e-246 853.6 523 85.3
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 7.5e-244 847.0 519 81.5
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 1.7e-243 845.9 536 79.5
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 5.4e-242 840.9 536 78.0
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 7.2e-239 830.5 521 79.3
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 7.0e-234 813.9 539 76.3
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 1.0e-229 800.0 503 80.7
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 7.5e-228 793.9 599 72.5
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 5.2e-221 771.2 523 75.0
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 2.6e-220 768.8 522 77.6
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 1.9e-218 762.7 519 76.1
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 7.0e-218 760.8 514 72.4
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 1.6e-217 759.6 514 72.2
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 2.1e-217 759.2 516 74.2
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 6.0e-217 757.7 522 72.8
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 1.3e-216 756.5 514 74.1
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 5.1e-216 754.6 518 77.8
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 6.6e-216 754.2 522 72.4
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 6.6e-216 754.2 522 73.0
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 6.6e-216 754.2 515 74.4
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 1.2e-214 750.0 514 71.4
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.8e-214 748.8 524 72.7
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 3.1e-213 745.3 516 71.1
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 3.1e-213 745.3 524 73.1
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 1.5e-212 743.0 516 71.3
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 1.5e-212 743.0 516 74.2
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 2.6e-212 742.3 516 72.1
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 3.4e-212 741.9 524 72.7
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.9e-211 738.8 524 72.5
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.4e-210 736.5 524 71.8
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 1.4e-210 736.5 524 71.6
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 1.9e-210 736.1 516 70.9
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 2.4e-210 735.7 520 70.8
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 2.4e-210 735.7 524 71.4
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 7.1e-210 734.2 516 69.6
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 1.2e-209 733.4 516 72.7
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 3.5e-209 731.9 521 69.9
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 2.5e-207 725.7 507 71.4
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 3.3e-207 725.3 516 69.0
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 3.3e-207 725.3 516 70.3
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 2.8e-206 722.2 572 64.5
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 3.4e-204 715.3 518 69.9
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 1.4e-202 709.9 508 68.9
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 2.4e-202 709.1 517 68.3
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 9.2e-202 707.2 517 68.1
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 1.2e-201 706.8 516 70.3
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 1.9e-199 699.5 475 76.2
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 4.3e-199 698.4 514 67.7
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 1.2e-198 696.8 516 65.1
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 3.6e-198 695.3 468 75.6
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 3.6e-198 695.3 516 66.5
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 3.4e-196 688.7 524 65.3
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 1.3e-195 686.8 522 65.5
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 1.3e-195 686.8 516 64.7
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 4.9e-195 684.9 516 69.0
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 5.4e-194 681.4 520 64.2
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 4.6e-193 678.3 516 65.9
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 2.1e-190 669.5 531 64.4
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.4e-189 666.8 530 64.3
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 5.3e-189 664.8 514 65.4
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 6.9e-189 664.5 523 65.2
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.3e-187 660.2 532 62.0
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 4.6e-185 651.7 540 62.2
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 6.7e-184 647.9 510 66.7
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 8.7e-184 647.5 523 65.8
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 8.7e-184 647.5 512 66.8
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 2.8e-182 642.5 525 65.3
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 8.1e-182 641.0 519 65.7
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 5.3e-181 638.3 531 59.9
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 2.6e-180 636.0 508 63.4
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 1.1e-178 630.6 531 60.5
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 1.2e-177 627.1 388 78.4
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 2.1e-177 626.3 525 64.6
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 7.9e-177 624.4 518 65.1
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.3e-176 623.6 506 62.6
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 2.3e-176 622.9 528 59.1
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 5.1e-176 621.7 564 59.9
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 1.1e-175 620.5 518 65.1
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 1.1e-175 620.5 518 64.7
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 1.1e-175 620.5 518 65.1
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 1.1e-175 620.5 518 65.1
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 4.3e-175 618.6 537 61.1
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 2.8e-174 615.9 529 62.0
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 1.0e-168 597.4 550 60.5
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 6.9e-165 584.7 514 57.8
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 7.9e-161 571.2 399 69.9
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.9e-154 550.1 362 74.0
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 1.4e-152 543.9 353 74.5
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 3.1e-149 532.7 514 53.9
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 8.0e-129 464.9 377 63.9
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 3.5e-124 449.5 278 78.8
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 3.4e-119 433.0 518 49.6
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.8e-112 410.6 476 50.0
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 1.3e-110 404.4 556 43.0
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 2.0e-108 397.1 545 42.6
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 3.1e-104 383.3 523 42.8
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 1.1e-96 358.2 251 70.1
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 1.2e-95 354.8 251 69.3
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.1e-93 348.2 499 43.3
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 3.1e-88 330.1 557 38.4
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 1.7e-83 314.3 269 58.7
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 4.0e-80 303.1 215 69.8
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 1.7e-78 297.7 210 69.0
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 2.2e-78 297.4 246 65.4
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 1.9e-74 284.3 475 38.7
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 1.5e-71 274.6 218 65.6
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 1.6e-68 264.6 234 63.7
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 2.1e-68 264.2 258 46.9
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 2.1e-60 237.7 246 49.6
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 3.3e-58 230.3 213 58.2
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 3.8e-54 216.9 506 29.6
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 5.0e-46 189.9 194 51.0
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 1.4e-45 188.3 248 47.2
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 1.4e-43 181.8 294 39.1
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 4.8e-41 173.3 155 57.4
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 9.1e-40 169.1 184 53.8
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 1.0e-38 165.6 258 41.9
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 2.9e-30 137.5 537 27.9
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 1.6e-28 131.7 82 73.2
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 2.2e-25 121.3 182 40.1
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 3.1e-24 117.5 104 55.8
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 1.6e-23 115.2 191 42.9
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 3.5e-23 114.0 123 47.2
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 1.7e-22 111.7 121 49.6
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 1.8e-19 101.7 126 47.6
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 9.8e-18 95.9 111 47.7
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 4.1e-16 90.5 53 69.8
Medtr8g040530 Medicago truncatula HOM05D005847 ORTHO05D007143 2.3e-11 74.7 102 42.2
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.8e-08 65.1 44 65.9
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 7.7e-07 59.7 102 36.3


User provided reference genes

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