Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 3.1e-50 201.4 99 100.0
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 6.3e-35 150.6 99 74.7
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 1.7e-32 142.5 100 72.0
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 3.3e-31 138.3 89 75.3
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 4.1e-26 121.3 99 64.6
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 4.1e-26 121.3 90 67.8
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 5.4e-26 120.9 94 66.0
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 4.6e-25 117.9 82 68.3
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 5.9e-25 117.5 94 63.8
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 1.0e-24 116.7 85 65.9
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 1.3e-24 116.3 94 63.8
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 1.3e-24 116.3 99 66.7
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 3.0e-24 115.2 83 65.1
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 1.2e-22 109.8 95 62.1
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.2e-22 109.8 82 63.4
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 2.1e-22 109.0 95 62.1
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.8e-22 108.6 88 65.9
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.8e-22 108.6 87 60.9
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.6e-22 108.2 88 65.9
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.7e-22 107.8 88 65.9
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 1.4e-21 106.3 87 63.2
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.3e-21 105.5 91 62.6
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.3e-21 105.5 86 60.5
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 4.0e-21 104.8 82 61.0
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 4.0e-21 104.8 99 62.6
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 5.2e-21 104.4 88 58.0
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 6.8e-21 104.0 92 57.6
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 8.9e-21 103.6 88 61.4
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 8.9e-21 103.6 91 60.4
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.2e-20 103.2 74 63.5
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 2.0e-20 102.4 83 61.4
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 3.4e-20 101.7 79 62.0
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 4.4e-20 101.3 89 59.6
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 4.4e-20 101.3 84 59.5
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 9.8e-20 100.1 89 58.4
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 9.8e-20 100.1 89 59.6
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 1.7e-19 99.4 85 62.4
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.9e-19 98.6 68 73.5
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 2.9e-19 98.6 89 51.7
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 1.4e-18 96.3 80 60.0
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 3.2e-18 95.1 81 60.5
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 3.2e-18 95.1 81 60.5
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 4.1e-18 94.7 91 57.1
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 4.1e-18 94.7 80 57.5
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 7.0e-18 94.0 75 60.0
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 1.2e-17 93.2 84 53.6
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 1.6e-17 92.8 100 55.0
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.6e-17 92.8 100 55.0
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 1.6e-17 92.8 74 59.5
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 2.7e-17 92.0 85 57.6
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 4.6e-17 91.3 85 57.6
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 6.0e-17 90.9 86 48.8
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 6.0e-17 90.9 85 61.2
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 6.0e-17 90.9 87 51.7
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 7.8e-17 90.5 83 56.6
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 7.8e-17 90.5 88 53.4
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 1.3e-16 89.7 86 54.7
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.3e-16 89.7 86 48.8
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 1.3e-16 89.7 93 53.8
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.7e-16 89.4 77 57.1
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.7e-16 89.4 97 51.5
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 1.7e-16 89.4 84 57.1
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 1.7e-16 89.4 88 51.1
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 3.0e-16 88.6 87 54.0
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 3.9e-16 88.2 96 55.2
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 5.0e-16 87.8 87 54.0
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 5.0e-16 87.8 97 50.5
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 6.6e-16 87.4 82 58.5
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 8.6e-16 87.0 82 53.7
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.1e-15 86.7 76 56.6
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 1.1e-15 86.7 80 53.8
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 1.1e-15 86.7 80 53.8
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.1e-15 86.7 86 57.0
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 1.1e-15 86.7 88 47.7
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.5e-15 86.3 75 52.0
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.5e-15 86.3 94 55.3
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 2.5e-15 85.5 87 49.4
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 2.5e-15 85.5 93 51.6
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 3.3e-15 85.1 91 51.6
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.3e-15 85.1 89 51.7
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 3.3e-15 85.1 95 55.8
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 4.3e-15 84.7 82 51.2
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 1.2e-14 83.2 83 53.0
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 1.2e-14 83.2 83 54.2
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 1.6e-14 82.8 83 51.8
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 1.6e-14 82.8 74 52.7
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 1.6e-14 82.8 82 56.1
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 1.6e-14 82.8 94 46.8
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.6e-14 82.8 92 53.3
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 2.1e-14 82.4 70 57.1
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 2.8e-14 82.0 86 54.7
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 3.6e-14 81.6 60 65.0
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 3.6e-14 81.6 87 48.3
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 4.7e-14 81.3 90 50.0
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 6.2e-14 80.9 75 53.3
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 6.2e-14 80.9 89 53.9
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 8.1e-14 80.5 79 55.7
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 1.8e-13 79.3 86 45.3
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 1.8e-13 79.3 76 55.3
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 1.8e-13 79.3 87 50.6
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 2.3e-13 79.0 76 56.6
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 3.1e-13 78.6 86 43.0
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 4.0e-13 78.2 79 51.9
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 5.2e-13 77.8 82 53.7
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 5.2e-13 77.8 92 50.0
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.2e-13 77.8 86 51.2
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 5.2e-13 77.8 86 51.2
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 5.2e-13 77.8 85 52.9
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 5.2e-13 77.8 101 45.5
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 6.8e-13 77.4 87 48.3
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 8.9e-13 77.0 98 50.0
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 1.2e-12 76.6 76 57.9
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 1.2e-12 76.6 96 40.6
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 1.5e-12 76.3 68 52.9
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.5e-12 76.3 89 49.4
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 4.4e-12 74.7 62 56.5
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 4.4e-12 74.7 67 52.2
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 4.4e-12 74.7 67 52.2
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 4.4e-12 74.7 81 50.6
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.4e-12 74.7 86 50.0
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 5.8e-12 74.3 80 48.8
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 7.5e-12 73.9 85 45.9
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 7.5e-12 73.9 77 44.2
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 1.3e-11 73.2 68 55.9
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 2.2e-11 72.4 80 48.8
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 2.2e-11 72.4 84 48.8
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 2.9e-11 72.0 83 51.8
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 2.9e-11 72.0 80 52.5
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 4.9e-11 71.2 54 59.3
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 6.4e-11 70.9 86 43.0
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 6.4e-11 70.9 84 48.8
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 6.4e-11 70.9 53 60.4
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 8.3e-11 70.5 91 46.2
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.1e-10 70.1 90 46.7
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 1.9e-10 69.3 56 58.9
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 4.1e-10 68.2 44 72.7
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 5.4e-10 67.8 58 58.6
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 1.2e-09 66.6 84 44.0
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.2e-09 66.6 80 52.5
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 2.1e-09 65.9 45 68.9
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.7e-09 65.5 80 52.5
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 4.6e-09 64.7 61 49.2
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.6e-09 64.7 77 48.1
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 1.3e-08 63.2 69 50.7
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 6.6e-08 60.8 45 62.2
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 6.6e-08 60.8 63 47.6
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 8.6e-08 60.5 38 73.7
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 2.5e-07 58.9 44 70.5
Hund23023 Selenicereus undatus HOM05D006473 ORTHO05D008108 2.1e-06 55.8 47 53.2
Solyc07g043070.3 Solanum lycopersicum HOM05D006473 ORTHO05D008108 8.1e-06 53.9 56 46.4
Sopen07g022630 Solanum pennellii HOM05D006473 ORTHO05D008108 8.1e-06 53.9 56 46.4
PGSC0003DMG400013558 Solanum tuberosum HOM05D006473 ORTHO05D008108 8.1e-06 53.9 56 46.4


User provided reference genes

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